Detailed information on CNT30575210


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709030Oryza barthiiGlycine max13.2922.788.12101forward
CNT30301323Oryza barthiiTriticum aestivum15.3923.5997.44117forward
CNT30650814Oryza barthiiRosa chinensis12.2432.1887.193forward
CNT30344011Oryza barthiiEragrostis tef21.7110.892.73165forward
CNT30364601Oryza barthiiSorghum bicolor11.4531.9997.787forward
CNT30100574Oryza barthiiOryza rufipogon61.8491.2694.68470forward
CNT30115465Oryza barthiiOryza nivara57.542.5199.31437forward
CNT30592968Oryza barthiiEragrostis curvula21.1822.391.93161forward

Expression of CNT30575210

Peptides detected in this lncRNA

>peptide 1 (32 aa)
IESLHCIIYQCLHQNPTHIDLRDKTGKNYYSH*

>peptide 2 (62 aa)
MIHLRTQTSREETAKPPVRSVDALNQGGVAGSDQSSRFLSLSTRCWSWSSLTTREVTEKRIQ*

>peptide 3 (86 aa)
MRSALRCDFMMDFWWRRQKGTTDIIGFSALRTTEIIPRRSPSSPGSVSSSSMIASAPAAYPSTTHSSAIAAESEALGLELGEEEEEE

>peptide 4 (55 aa)
MYHVLRSIKDQNLLKLDLKQIIERSNPHHDLKHPYPYYKKTQQHASHDTSKNTNE*

Sequence

>CNT30575210
ATAGAGAGTTTGCATTGCATCATTTACCAATGTTTGCACCAAAACCCAACCCACATCGACCTTCGTGATAAAACAGGTAAAAACTATTATTCCCACTAAT
CCAAAAATAACCTAGAGTCTCACATTTGCAACTTTTTTTTTTTGGAGAAATTGATGTATCATGTCCTTCGTAGCATAAAAGACCAGAATTTACTCAAACT
AGATCTGAAGCAAATAATAGAACGCTCAAATCCGCATCACGATCTCAAGCATCCATATCCATACTACAAAAAAACACAGCAACACGCATCACATGATACA
TCTAAGAACACAAACGAGTAGGGAAGAAACAGCGAAGCCACCGGTCAGGTCAGTCGACGCGCTGAATCAGGGAGGGGTAGCAGGATCAGATCAGTCGTCC
CGCTTCTTGAGCTTGTCGACGCGCTGCTGGAGCTGGTCGAGCCTGACGACGAGGGAGGTGACGGAGAAGAGGATCCAGTAGAGGAGCAGCGCGGCGGCGA
TGAGGAGCGCGTTGCGCTGCGACTTCATGATGGACTTCTGGTGGCGGAGGCAGAAGGGCACCACCGACATCATCGGCTTCAGCGCGCTCCGCACCACGGA
GATCATCCCCCGCCGGAGCCCGTCCAGCCCCGGCAGCGTCAGCAGCAGCAGCATGATCGCCTCCGCTCCCGCCGCGTACCCAAGCACCACCCACTCCAGC
GCCATCGCTGCCGAATCGGAGGCTCTCGGACTCGAGCTCGGGGAGGAGGAGGAAGAGGAG