Detailed information on CNT30575205


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002876, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552646Oryza barthiiOryza glaberrima42.4364.0692.521230forward
CNT30596964Oryza barthiiOryza meridionalis15.18101.3889.77440reverse complement
CNT30371105Oryza barthiiOryza glumipatula39.3249.5987.631140forward
CNT30109213Oryza barthiiOryza longistaminata39.0872.6392.411133reverse complement
CNT30100995Oryza barthiiOryza rufipogon32.8484.491.39952forward
CNT30117287Oryza barthiiOryza nivara14.3570.7592.31416reverse complement

Expression of CNT30575205

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLPLRIRLRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNHAGIRRHREGRTIAMF*

>peptide 2 (37 aa)
MRSFKSHNSFKFKLYLFMNFNCTVHLVFISVFPRFAF*

>peptide 3 (38 aa)
MXSLTSAPSWPSKININLSSLFNDILFLFNICHLPXMI*

>peptide 4 (42 aa)
MINYSTVLQILNSLPNAAFANEPYIMPSFGILVHLHICCVAC*

>peptide 5 (33 aa)
MLNPFKAIILFQLCIIFECHRVVNLSPLIXGRR*

>peptide 6 (35 aa)
MLILAIIIKPQLKKNDPEGEDVWLIPHLSCLWEWS*

>peptide 7 (36 aa)
MLLSQMNLILCHPLVSLCTCIFAVWLVEYVICSFLQ*

>peptide 8 (37 aa)
MLWDCVLWVQWYTSNQSKTIRIAVPTVMGGSNNVFRD*

>peptide 9 (32 aa)
MGYNLISVNLIYWIGSAKCYMYVCLAMPRNIS*

>peptide 10 (33 aa)
MSFVISLTPLINDNNVIINLTPGLEWIIPGLEV*

>peptide 11 (70 aa)
MVLMVVLMTIKDRFXSYCCETFTVPTTSQRGQRLYLLYSMIHYSVPDCEAARSPWGSLGSPLPLVLRGRL*

>peptide 12 (32 aa)
MDNSWFGGLICTTGVGCPGLVGPVQHGCAVQC*

Sequence

>CNT30575205
AGGAGCGACAGGTGGGAATGGCCGTGGTAGGGAGGGCCTGTCACACCCTGAAAATCGCTAAATTATAAATTGTTGTGAAAAAGGAATTTTTAGAAATTGT
TTAATAATAACTAAAGAAAGTGTGTGAATAGAATCTATGAAAAATTTGAACTTAAACTTGAGCTAGATAAAATTTTATTAAATACTTTGTATGCCCAAGT
ATTTTTTGGATTTTTTCCAGAATTATTTGAGCATTGGAAATATTTTTAATAAATGAAAGATCATTTCAGCAATTATTTAAATTAAAAAGTTAATTAAATT
CTCCTCCCTTGTCTTGGGCTGAATCCGGCCCATTCCCTTCCTTCCTCTCTCTTCCGCCGGCCCAACCCGAGCCTGCATCCTCTCTTCTTCTCTCAGCCAA
AGTCCAGTTATGCTCCCTCTTCGAATCAGGCTGAGAAAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAAACCACGCCGGAATTCGCCGTCACCGTGAAGGCCGAACCATCGCCATGTTTTG
ATCTCCGGCGAAGCTTTGCCGTCGACTCCGTGGTCGCCGAACCCCGCCGTCTCCTCCGTTGGCATCGCAGCGACAGCAGCAAGCCCGGCAGCCACCCCCG
CGGAGACGCAAGCCATCGGGGCACCGTCGTCATCGTGAAGCCGATCTGTTCCATCTTCAGCCGTGCCGTTCGTCGTCGTCCATCGTCGCCTTCGGTCGCC
GTTGCTTCCATTGGATTCGCAGCTGTGAGGAGAAGCCCGTCCACCCCTCCGTTGCCGCCGCTCGTCGCCGGCCATCTCCCTCGCCGTCTGTCGTCGCGTA
AGTTGTGGTAAGGGTCGCCTTGATCTCCTCTCTCCCGGTGCCCTCCGTTTGCATCATTGTACCGTGGTTCGCTGGTAACTGCCGTTCCCGTGCTTGCNGT
CNTCGATCCTGCGTGGCAGCCATGTCNTCGCTGACATCAGCGCCATCTTGGCCATCCAAAATTAATATAAATTTGTCATCTCTTTTCAATGACATATTAT
TCCTTTTTAATATATGTCATCTACCAANTATGATCTAATCTNTTTCNNGAGGATGTTTTAATCTTNTGTCTCAGNTATAAATCATTTGTAAATTGTTTAA
TCAATTTGGAATAGTATTTTCTTTAATAGGTTTAATTGCAATTAAATCTTGTAAAATTAATAACTAATTCATACGAACTCGGAATGAGGTCGTTCAAGTC
TCATAATTCATTTAAATTCAAGCTCTACCTATTTATGAACTTTAATTGTACTGTTCATTTGGTTTTTATTAGTGTTTTTCCTCGTTTTGCGTTCTAGGTT
TAGTTTTCCGTTGTTTCGGAGGATCGTTCGTTCGTTGGAGAAGTTCCTGAAGACGAATTGAAGACGCTTGCTTGCAAGGCAAGTCACACAGATCCCAAAN
AACCCTTTGAGCATGTTGAACCCGTTTAAAGCTATTATTTTATTTCAACTATGCATTATTTTCGAATGTCATCGGGTGGTGAACCTTTCCCCGTTAATTA
NTGGCCGAAGATGACTTTATTTTCCTATGGGTTATAATTTGATTAGCGTGAACCTTATATATTGGATTGGTTCAGCTAAATGCTATATGTATGTTTGCTT
AGCCATGCCTAGAAACATTAGCTAACTAAAGGGGTTAAATATAAATTATATTATACTGTGATTATTAATGATGGTTATAATAAATGGTAGCTCACGATGG
TGAATCGTGTTATGTTAATTAATTGATAATTAAAACCTGATTAAGGTGGGTTGTGAGCATATGGTTTTGATGGTCGTGCTCATGACAATTAAGGACCGGT
TCNCGAGCTACTGTTGTGAAACATTTACCGTGCCAACCACAAGCCAGCGTGGGCAACGGCTTTATCTTTTGTATAGCATGATTCATTATAGTGTGCCAGA
CTGTGAAGCGGCGAGAAGTCCGTGGGGGTCGCTGGGGAGTCCATTGCCTCTGGTTTTGAGGGGGAGATTATGATCCAGGAACGGTGCACTGTGGTGAGTT
GTGTTGTGCGAGGGGTATTGTCACAGTTCCTTTCCGAGGTACCGTGGTGGTATTAAGGCGCATGGTAACATGTTGTGGGACTGTGTCTTGTGGGTACAGT
GGTACACCTCTAATCAGAGTAAAACTATTCGAATAGCCGTGCCCACGGTTATGGGCGGGTCTAACAATGTCTTTCGTGATTAGTCTCACACCACTCATTA
ATGATAATAATGTGATAATTAATTTGACTCCTGGTTTGGAATGGATAATTCCTGGTTTGGAGGTTTGATCTGTACGACCGGGGTTGGTTGTCCAGGTTTG
GTTGGGCCTGTGCAGCATGGGTGTGCTGTTCAGTGTTGATCAATATTGATGATTAATTACTCTACTGTTTTACAAATTCTCAACTCTTTGCCAAATGCTG
CTTTCGCAAATGAACCTTATATTATGCCATCCTTTGGTATCCTTGTGCACTTGCATATTTGCTGTGTGGCTTGTTGAGTATGTCATATGCTCATTCTTGC
AATAATCATCAAACCTCAGTTGAAGAAGAATGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCATTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCTCG
CTAGGTTTTATTTTTCCGCTGCAGTTTTCTTCATGGTGAGGACTAAGTGCCTCTTAAGTAAGTATTTATCGTTTTAGTTAATTTGATGAATCTGTATATT
AAATTGTCAGTTTGTGTACCTCNGCTGATTCCTGGACGAGGGTTTTAATGCACAAATTAGTTCGGAAATTACTTGTGAATTTCTGGGCGTGACAGGGCC