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Detailed information on CNT30575187


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007580, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604093Oryza barthiiOryza punctata73.9396.292.63380forward
CNT30551432Oryza barthiiOryza brachyantha46.1111.987.76237forward

Expression of CNT30575187

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVSLFISCVGDSMPRESICGDGSGVGLGIRRRPWWSEIMRNT*

>peptide 2 (29 aa)
RVVCLDIRDYFMIMTSRWILYVCNTIVCY*

>peptide 3 (34 aa)
MAYDGGIVCVWDAELNLEGVQIWYDWLCKVSFLY*

>peptide 4 (32 aa)
MEIPYGIRWRYCVRMGCGVEFGRSPNLVRLVM*

Sequence

>CNT30575187
CGGGTTGTTTGTTTGGATATCCGTGATTATTTCATGATTATGACTTCTAGATGGATACTATACGTATGTAATACTATTGTTTGCTACTAATGAGTTAAGT
TGGAGATAGCTTGGTCTCGGAATATGGTTTCTTTGTTTATTTCATGTGTAGGTGACTCAATGCCTCGGGAGAGTATTTGCGGTGATGGATCGGGAGTCGG
CTTGGGGATAAGACGACGTCCGTGGTGGTCAGAGATCATGCGGAATACTTAGGCTAGAGTTGATGCACGTGGTTGATGGAGATTCCATATGGCATACGAT
GGAGGTATTGTGTGCGTATGGGATGCGGAGTTGAATTTGGAAGGAGTCCAAATTTGGTACGATTGGTTATGTAAAGTTTCTTTCTTGTACTAGAGGGTTT
CCTAAGGTGTTTAGGACTCCTAGTATGAGTTTGGTTCGTGGCTTTAGGCTGCCTACCTCATGTATAAATAGAGGGGGAGCGTGAGGCTTCCCGGTATCGC
TTTGGAGAGCAATT