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Detailed information on CNT30575176

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003266, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691303	Oryza barthii	Oryza sativa	70.56	14.88	100	465	forward
CNT30108168	Oryza barthii	Oryza longistaminata	99.85	28.26	99.24	658	forward
CNT30100211	Oryza barthii	Oryza rufipogon	76.33	99.41	100	503	forward
CNT30115971	Oryza barthii	Oryza nivara	98.63	29.83	99.69	650	forward
CNT30550641	Oryza barthii	Oryza brachyantha	67.07	27.1	83.26	442	forward

Expression of CNT30575176

Peptides detected in this lncRNA

>peptide 1 (75 aa)
HDKQSVSHKFGTMLYSIHTQPSAMVHINSDTPCPKWVHVNSDTSCPKWQGKVHMYKFRYILSKMAREVHKLRTRW*

Sequence

>CNT30575176
CCATGATAAGCAATCCGTTTCTCACAAATTTGGCACAATGCTATACAGTATACACACACAGCCCAGTGCCATGGTTCATATAAATTCAGATACACCTTGT
CCAAAATGGGTTCATGTAAATTCAGATACATCTTGTCCAAAATGGCAAGGAAAAGTACATATGTATAAGTTCAGATACATCTTATCCAAAATGGCAAGAG
AAGTACACAAATTAAGAACAAGATGGTAACACCGACATAGGTTCCTACAGCAGCAAAATACAATACAGGTAGCAGGCACCATGGTTAAATAGGTTACATA
CAATGCTTGGATATAACTCAGACAACTAAAACCTATCGAGTGAATATCTCAGGCAGCCTGTCCGCCCAAGAGACAAGCCCACGGACTAATGGTTGGCCTA
CAAGGGCAGATCGATCTGGCGATTCTGAACTAACCTACTACTATACTCACTTTGAAAGGACTGTGTTCTAGTTACAGGTAACCAGGTCTTCAGCTTCACC
ATCCTACAACTACTATGATCACTGCTCACATTGAAAGGACTGTGTTCTAGTTACAGGTAACTAGGCCTTTAGCTTCGATCACCATGGACCCGTCAGAGTC
CTCCGAAGGCAAATTCTCTTTGCTGTCGGTCCAACTTGTCGGCTCATTCTCTCTAGAAT