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Detailed information on CNT30575146


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003145, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691349Oryza barthiiOryza sativa56.799.3799.16474forward
CNT30552667Oryza barthiiOryza glaberrima78.4782.72100656forward
CNT30100358Oryza barthiiOryza rufipogon101.270.7998.58846forward
CNT30116022Oryza barthiiOryza nivara75.7282.199.05633forward

Expression of CNT30575146

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MWQGRLRLGVITLDLLHGDGGVVVVIAVSHHGSRSWRGRGRHHGCSLATLVALRVPLILHDRSMDSAKASRELK*

Sequence

>CNT30575146
CCCGCAATGCACACTACCAATGAACCAAGAGCGGACCAATACATGAGGCACATGATTGAGAAGATCTAGTAGAAAATGTGATCACAATGCAGTGTACCCC
AGTAGAGTAGTACAGTACAACTGTACAAGGCAACAATATATTCTGGGCAGAAATCATTAATACCAAGGCAGAATGCCCAGCCCAAAACCAATACAAGAGT
GCCAATAATAATTAAACAAACTCAACATCTAGTACTTGACTATAGCAAACTGAAGCCCGTACCCCACACGAAACACAAACTTCGATCACTGATCGGGCTT
CACTGACCAGGCCTTGACCAATCTTGACACGAACTTAACAAAGCTGCAGTGCAGAAAAAGCACCAAACTAGCACACGCCAAACACTTCCAAATTCCAACC
ATGGCCTGGTCTCACACACGCCCCAATTAAGCGCTGCTCTTGTGCTCGCTGGCGGCGGCGGCGGCGCAGTTGCGTCTTCCGGCTTCTTGTGGCCGCCGGG
CAGCTTCTCCTTGATCTTGTCGAGGAAGCCCTTCTTCTCCTCCTCGGGTGCATGTGGCAGGGTCGCCTCCGTCTTGGCGTGATCACCCTCGATCTTCTCC
ACGGGGACGGCGGTGTCGTGGTGGTGATCGCCGTGAGTCACCACGGGAGCAGGAGCTGGCGTGGGCGCGGCCGTCACCACGGATGCAGCCTCGCCACCCT
GGTGGCTCTCCGTGTTCCTCTCATCCTCCATGATCGATCGATGGATTCAGCTAAAGCCTCTCGAGAACTAAAGTAATCAAACAACAGATCAGCAAGAACT
ATTCGCTCTTGACTTGTTTGAGCTGTGACGAGTCGC