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Detailed information on CNT30575145


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369556Oryza barthiiOryza glumipatula68.7374.2699.66877forward
CNT30110893Oryza barthiiOryza longistaminata40.9162.9797.89522forward
CNT30100560Oryza barthiiOryza rufipogon69.0466.9599.43881forward

Expression of CNT30575145

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MNLFCCWSSSYPCMPGDWRIIVTMQQSAYWLLGTRG*

>peptide 2 (36 aa)
FIPREYASNSLASTYHHPFRARTYPIQNISFASIQH*

>peptide 3 (39 aa)
MCGQYHKPLIIYTLWPRAGSYIGQFKVFFCPRLLTNKTE*

>peptide 4 (41 aa)
MLLRSLLPLTSISLSDSCFSFSLSALRRSKGGRVLFAWLCR*

>peptide 5 (65 aa)
MYASSISAPVDLDLVIRFVFFFFPLRLKKKQRRSRSLCVALSLTRYVLLVRSSSEFALQTCSVCL*

>peptide 6 (72 aa)
LFLANMPLIRWHQRTIIPSVHAPTRSKIYPSLQYSTSSFISFAPSSSLPGVQLQFLLIDNISRLCSGLANCY*

>peptide 7 (91 aa)
MSTSSTWYDDQFQVISRNGDLPHKIFVEQEYVRCPGYVLVHGKSFPRPIITLWYHKFTTPETDRDKARSTAAHCVHFLFHRQYIFTLKRIM*

Sequence

>CNT30575145
GTTTATTCCTCGCGAATATGCCTCTAATTCGCTGGCATCAACGTACCATCATCCCTTCCGTGCACGCACCTACCCGATCCAAAATATATCCTTCGCTTCA
ATACAGCACTAGCAGCTTCATCTCATTCGCCCCATCTTCCAGTCTTCCAGGCGTCCAGCTCCAGTTTCTTCTCATTGACAATATATCCAGATTATGCTCT
GGGCTTGCTAATTGCTACTAGTAGAATACTAGAGGTGGTCGTGGTGTGCAGGTGAGATTATTGCTACCCATGAACCTGTTTTGTTGCTGGTCATCTAGCT
ACCCGTGCATGCCTGGAGATTGGAGAATAATTGTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAATGGCT
CTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGAGACGCACGCATGGTTTCGTCGATTCTCTGGTTCATTTGAGGTGAGGCTGCAATAG
GAGTTCCTTTTTGTCATGTATGCTTCTTCGATCTCTGCTCCCGTTGACCTCGATCTCGTTATCAGATTCGTGTTTTTCTTTTTCCCTCTCCGCCTTAAGA
AGAAGCAAAGGCGGTCGCGTTCTCTTTGCGTGGCTCTGTCGTTAACTAGATACGTCTTGCTGGTTAGGAGTAGTTCTGAATTTGCATTGCAGACTTGCAG
TGTGTGTCTCTGAAGACGACGCTGCAAATCGCCATCTCCGTGTGCTTAATTACGACAGGTTTGCAAGGAACAGCGGCTGTTGATGTTGCTGATCGTCAGC
AATTCCGTGTTTATGCGTGTCTGATTGCAGGAAAAATGAGTACTAGTAGTACCTGGTATGACGATCAGTTCCAGGTCATCAGTAGAAATGGCGATCTTCC
ACACAAGATTTTTGTAGAGCAAGAGTACGTTCGATGCCCTGGATATGTTTTAGTACATGGTAAATCTTTCCCTCGGCCAATAATAACGCTGTGGTATCAC
AAGTTCACAACCCCGGAGACTGATCGAGACAAAGCAAGGAGCACCGCGGCACATTGTGTTCATTTTTTGTTTCATCGACAATACATTTTCACCCTGAAAA
GGATTATGTGAACGGAGCTTCCAATGTAAATTGATACATGTGTGGTCAATACCATAAACCTCTCATAATTTACACGCTTTGGCCAAGAGCAGGCTCGTAC
ATCGGCCAATTCAAGGTGTTCTTTTGTCCAAGATTACTTACGAACAAAACGGAGTAAAAAATATATGTCCCAAAGG