Detailed information on CNT30575140


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552605Oryza barthiiOryza glaberrima67.3169.89100492forward
CNT3066950Oryza barthiiLeersia perrieri69.0868.8988.32505forward
CNT30369666Oryza barthiiOryza glumipatula65.6685.1199.17480forward
CNT30105984Oryza barthiiOryza longistaminata55.9522.4798.53409forward
CNT30150498Oryza barthiiBrachypodium distachyon11.4929.4789.2984forward
CNT30100425Oryza barthiiOryza rufipogon68.5471.7898.8501forward

Expression of CNT30575140

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MDGTCWNPAHQHLLLQLHHNCHILQHHHHKHLRHRHPLHRHHHHMPHKHHRHLHTRSHHNHHHILIQIQHYLHSHTLLCHNHMQYYHNNLLQPIGNQHH

>peptide 2 (41 aa)
MATVSCLRRQCHYRTKYNRSIIPILFLTQKALFEGSNSLSI*

>peptide 3 (63 aa)
MVPAGTPPTSTSCSSSTITAISSSTTTISTSAIGTPSIGTTTICPISTIGTSIQGATITTTIS*

>peptide 4 (37 aa)
MCSFYSKLRMGSATKITQLVQLRDNSMKLNKCSGAAD*

Sequence

>CNT30575140
TTATAGCAGCAAGGTCAATAAACAGTCAAATTAGAATATTTAAGCAAATCCGTTAACGGTTCCCTTACATATAAGGGCAGATGGCAACAGTTAGCTGCTT
GCGAAGGCAATGTCACTACCGCACAAAATATAATAGGTCAATCATACCAATACTGTTCCTAACACAAAAGGCTTTGTTTGAGGGTTCTAATTCTCTCAGC
ATATGAAAACTAACGGAATACAACATAGCTTTCATGTGTAGCTTCTACAGCAAACTACGGATGGGTTCAGCGACTAAAATTACACAGTTGGTCCAGTTAC
GAGATAATTCGATGAAACTAAATAAATGTTCTGGTGCCGCTGATTGAGTAACCCAAGATAAAACGCTGATTTTCCAGGAGGTGCACTTATTGTATCCTAG
AAAAAACTCTCAAGAGTTCACTCATTTCCCATATGGATGGTACCTGCTGGAACCCCGCCCACCAGCACCTCCTGCTCCAGCTCCACCATAACTGCCATAT
CCTCCAGCACCACCACCATAAGCACCTCCGCCATAGGCACCCCCTCCATAGGCACCACCACCATATGCCCCATAAGCACCATAGGCACCTCCATACAAGG
AGCCACCATAACCACCACCATATCCTGATCCAAATCCAGCATTACCTCCATAGCCATACCCTCCTCTGCCATAACCATATGCAGTACTATCATAATAACC
TCCTCCAGCCGATCGGTAACCAGCACCATAC