CANTATAdb - search

Detailed information on CNT30575136

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10716|CYSP1_MAIZE, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691572	Oryza barthii	Oryza sativa	9.33	73.79	100	259	forward
CNT30533093	Oryza barthii	Eucalyptus grandis	3.31	33.45	83.7	92	forward
CNT30225013	Oryza barthii	Hordeum vulgare	2.59	26.09	94.44	72	forward
CNT30393491	Oryza barthii	Triticum turgidum	3.93	44.49	92.66	109	forward
CNT30563527	Oryza barthii	Actinidia chinensis	4.57	41.64	86.61	127	forward
CNT30588923	Oryza barthii	Musa acuminata	4.39	31.85	83.61	122	forward
CNT30552831	Oryza barthii	Oryza glaberrima	9.22	48.85	100	256	forward
CNT30250800	Oryza barthii	Avena sativa	5.51	44.48	90.2	153	forward
CNT30461926	Oryza barthii	Saccharum spontaneum	8.21	47.2	87.28	228	forward
CNT30232247	Oryza barthii	Ananas comosus	4.79	39.47	87.97	133	forward
CNT30364464	Oryza barthii	Sorghum bicolor	9.58	56	88.35	266	forward
CNT30498199	Oryza barthii	Digitaria exilis	6.48	31.63	87.22	180	forward
CNT30116007	Oryza barthii	Oryza nivara	9.97	40.86	99.64	277	forward
CNT30603768	Oryza barthii	Oryza punctata	5.98	68.31	95.18	166	forward

Expression of CNT30575136

Peptides detected in this lncRNA

>peptide 1 (36 aa)
AIPPSVGVILLTLKATGFQKIAEGISHQSTIASSIT*

>peptide 2 (69 aa)
MMTHPKEKRKFYYFFLNRYNDIKGTVVIQLYNNITKMGSHLGPSYQNERVHQASAHKRLAVYPSGETVK*

>peptide 3 (31 aa)
MHKVTMNSQRDAYLDLILVLSTCGRPRETPT*

>peptide 4 (33 aa)
MQLLSQISLSHSFAPISLSPSHLGALPNHKPRK*

Sequence

>CNT30575136
GCCATCCCTCCCAGTGTAGGGGTAATCCTTCTCACTCTCAAGGCCACCGGATTTCAAAAGATAGCTGAAGGCATTAGTCATCAATCCACCATTGCATCCA
GCATCACATGAATCAGGTTCTGATGAATCACACTGCAAAATTAGATAACAATGAAGCCCAGTAAGTTGAGATACCCCATTCAGTTGAAACAGGTAACAGT
AGAAAACAAATAACAACAGTACATATCCCACTGTCAAGTCAAAAAAAGTATTATAATACCAGGAAGGCTAAAAATTATTTGAGCACGACTCGGGTAAGCT
TTACATGTGTACTTTGCGATGAAAGCAATGTGAAAATCACTTAAGCTGGTTACGACAAATTGTAGAGGTTGTGCAAGACATTAGCCTGGTGCTACTTTGT
AAAATTACCATAGGAATCACTGTTGATTATCTTTTAAATATATGAGAAAATTGTTTTTTCTGAACAAATATTTCTCGCATTTCCTAATGTAGAAGCTTAG
TAATGAAAAGCCTTCTAGAATGAGAGCCACTTACATCTTACTACCAAAAAATCCTACATAGAATTTTCAACTAGGAAGAGAATCACCCATGCTATAGGCG
GAAATTAAAACGGTGGTGCAGACTTTGTAAGGATGGTTTAGTGAATTGTGTTATTATGGAAATAAGATTTGTTTTATTTTTGAACAGAACAGAGAAGCAC
TAACTTTTTCATTAATTAGGATTTAGGAGTGAAGCTTCAAGAAGTAAATATGGAAAGAAATAGGTCAAGAGCAAGCCCCTAAAATATGATGGACACAACC
AAATAAAGAGGAAACCGGAAATTTGCCCCTAAAATATGATGACACATCCAAAAGAAAAGAGGAAATTTTATTATTTTTTTCTTAATCGATATAATGATAT
AAAAGGTACAGTAGTTATTCAGTTGTACAACAATATCACCAAGATGGGGTCTCACCTGGGGCCCAGTTACCAAAACGAAAGAGTACATCAAGCCAGTGCA
CACAAACGTTTGGCTGTCTATCCATCAGGTGAGACAGTAAAATAAGAAATGAAGCAATGACAGAAACAACCTGCGGCCGATATCGACTCCATTTATATTT
TTCACTCAAGTGAACTTAATGGTTGAGATTTGAGTAATTTACAACTTCCTCATGGTAGCTTCACTAGTACCTAAAAACTAAAATTGCTGGAATACATGAC
AACCCCAGAACATCGGGTACTTTCTTAACTCCCTTTCTCTAAAATTTAACTAATCATAGGGTTCCCAAGTTCAGCACTTTTTAGTTCATTAAGTGCCCAC
TCAAACAACCCTTTGTGCCCAATTGTATACGCTTGTTCGTTACCATACCATAGGCACGTACCAACACACAAGGGTGCATGAACTCTCTTATTTCATAGAC
CTATCAATGCACAAGGTCACCATGAACTCCCAGAGAGACGCTTACCTAGATCTCATCTTAGTTTTATCCACCTGCGGTAGACCCAGAGAGACGCCTACCT
AGACCGATCTTCCAGAGCGACATGTGCCAGTATCAATTGGAGATTTTATCCACTCAGCCTTGCATTCATCATCTTTTGTTTTATTCACCTACTTCACCAC
TATAAAATCGACCACGACAAATTTGCTTGCTAAGTTCACCACTTTGGTTTGACTTCTTAAGCACTGATAATACCACAAGCCACTCTTTTTTCCTCATAAT
TTCCCTTTCAAAGTTAGCCAAGGAATCATGCAACTCCTTTCCCAAATTTCCCTTTCCCATTCATTTGCCCCAATTTCCCTTTCCCCTTCTCATTTGGGTG
CGCTGCCCAATCACAAACCAAGAAAATAGATAGGAAAAGGACAGCGCAGCAGCTGACAAAACATTGGCGGAAAGCCAGAAAAATCCAACCTCTCTTATAG
CACCCATCCAACCTCTCTTATAGCACCCATAGAAGCACAGACCAATCACAAAATTACAAATAAAACTTGCTCCTAATAAAAGGATAATAATATACCAGTA
CGCAAGAACAAGAAAGGGGAAGCAAACGCCTCTCACCTCATGGTCGCAATCGACCATCTGCTGCTCGGAGAGCACGTCCATCTTGCCCGTCGCCAGGTAG
TTCGCTCCCTCTAGCGCCCCCGACGCGCTGAACGACCAGCACGACCCGCACGATCCCTGCAAAAGCAAAAAAATTAAAAAAAAATCAAGAAACGATAAGA
CGGCTGATTCAATCGAGAAATCAAAGGAGGAGTCCTTGGTTTGGGGGAAAAATCGACGGGAGACGAGAGGGGAACCTGGTTCTTGACGGGGCCGACGGCG
CCGTGGTCTCTCCAGTCGAAGTCGTCGGGGAGGCCGAGGTAGGCCCGGCGGAACTCGGCCGGGGTGAGGTCGGAGAACTTGGTGACGCCGTGCTCCGCGG
AGGGGTCGAGCAGCTGGTGGCGGCGCGCGCGGCGGAGGTTGGCCTTGAACACGGAGAGCCGGTACGCGTGCTCGTCGGCGTCACGGTAGGACTTCCCGAA
CCTCTGGACGAAGCTGGCGAAGTGGCGCTCCGCGTTCAGCTCCAGCTCGTTGTCGTCGCCGCCGCCGACCACCTGCCGGATCAGCGGCTCCTCCTCGCCG
GGGACTGAGGCGGCGGCCACCGCCGGGGAGAGGAGGAGGAGGCCGAGGAGGAGGAGGCGGTGATCCATGGTGGGGGGATTTGGTGCCTGCTTGTTTGGAA
TTGGATTGGTTGCTTCTCCGCGGTAGGGGGGCGTAGTGGTAGCTTTATAGGGAGTTGTTAAGAGCAGATTTTTTTTT