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Detailed information on CNT30575131


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369692Oryza barthiiOryza glumipatula49.1950.8497333forward

Expression of CNT30575131

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RRHLLKNGGSSNAKATAIGSPASPARTLYKGDH*

>peptide 2 (60 aa)
MADEQCSSSSSMQPNRNGMRIFFGVIFFFFSFLFFLLLPAQMQFTRSSDQWSDTASWGGR*

>peptide 3 (82 aa)
MERHGELGRTMTRMSWCQEAASGLPDDGGLGDHGGDDVRVHVGRRPAILEVALAVLLRLPADAEMCSLCLSLSFSMADLMIS*

Sequence

>CNT30575131
CGGCGTCATCTATTAAAAAACGGAGGGAGCAGTAACGCAAAAGCCACGGCTATTGGAAGCCCAGCAAGCCCAGCAAGAACTTTATATAAAGGTGATCACT
AATAACAATGATGATAAAACCACATGTGGAAAGGAGGACGATGATCCACAGGATGGGACAAGTACCGTAGGTACGGCCATTATTGGAGGATTACACAAGA
GCACCCAAACGCACTCACCCAAAAGACGAAGAAAAAGCTAATCTAAATGGCAGATGAGCAATGTAGTAGTAGTAGTAGCATGCAACCAAATCGAAATGGA
ATGAGAATTTTTTTTGGCGTGATTTTCTTTTTTTTCTCTTTCCTTTTTTTTTTACTTCTCCCAGCACAAATGCAATTCACCAGATCGTCCGATCAATGGA
GCGACACGGCGAGCTGGGGAGGACGATGACGAGGATGTCGTGGTGTCAAGAAGCCGCTTCAGGGCTTCCAGATGATGGTGGTCTCGGCGATCATGGAGGT
GACGACGTAAGGGTCCATGTTGGACGCCGGCCGGCGATCCTCGAAGTAGCCCTTGCCGTTCTGCTCCGTCTCCCGGCCGACGCGGAGATGTGCTCCTTGT
GCCTGAGCTTGAGCTTCTCAATGGCGGACTTGATGATCTCGTAGCCACCATCGTTCCTCATCGACTTGGTGCTGAAA