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Detailed information on CNT30575129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000778, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Oryza barthiiSetaria viridis22.3628.3992.31182forward
CNT30532843Oryza barthiiEucalyptus grandis27.2730.3390.09222forward
CNT30316236Oryza barthiiCorylus avellana30.3453.8187.04247forward
CNT30547574Oryza barthiiIpomoea triloba25.3158.0386.41206forward
CNT30512729Oryza barthiiJuglans regia4334.0185.14350forward
CNT30373394Oryza barthiiArabidopsis thaliana30.8444.6684.86251forward
CNT30405823Oryza barthiiBeta vulgaris18.83489.54153forward
CNT30488117Oryza barthiiOlea europaea23.4639.1487.43191forward
CNT30711584Oryza barthiiGlycine max73.2284.6682.21596forward
CNT3085191Oryza barthiiVigna radiata27.5231.2481.25224forward
CNT30552635Oryza barthiiOryza glaberrima10078.4299.88814forward
CNT30143941Oryza barthiiMedicago truncatula29.7354.0283.47242forward
CNT30440797Oryza barthiiAegilops tauschii75.5584.4887.48615forward
CNT30612508Oryza barthiiArabis alpina31.9410.2486.15260forward
CNT30135610Oryza barthiiLolium perenne31.0829.9188.54253forward
CNT3014085Oryza barthiiZea mays68.5591.4888.17558forward
CNT30605685Oryza barthiiGossypium raimondii41.8944.6387.39341forward
CNT30722731Oryza barthiiTriticum spelta27.6444.0384.44225forward
CNT30361520Oryza barthiiSorghum bicolor31.237.1388.19254forward
CNT30596064Oryza barthiiOryza meridionalis62.910099.02512forward
CNT30369654Oryza barthiiOryza glumipatula52.0948.1899.76424forward
CNT30107537Oryza barthiiOryza longistaminata98.2887.0599.25800forward
CNT30100253Oryza barthiiOryza rufipogon10073.8799.88814forward
CNT30497701Oryza barthiiDigitaria exilis37.8494.7791.56308forward
CNT30116094Oryza barthiiOryza nivara91.0384.299.87741forward
CNT3050899Oryza barthiiCucumis sativus16.2252.3881.82132forward

Expression of CNT30575129

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSQWSNTHWGKACPDVAALSWLENPKDSMTGR*

>peptide 2 (34 aa)
MLGPVVSGPKHQIFFARSLSQPNSSDRILERTLGS

>peptide 3 (39 aa)
QKDDPGSTSVTSRQSKNSFSVAREHRIVDVKHMHSTKGK*

>peptide 4 (57 aa)
MKYDNESSSLSSRPTRTCKGNGTTHAAAKNLELVLEIGEGSHLLLETLPLADILHQG*

Sequence

>CNT30575129
CAAAAAGATGATCCAGGTTCCACATCCGTTACATCACGACAGAGTAAAAATAGTTTCTCAGTAGCACGCGAACATAGGATTGTTGATGTGAAACACATGC
ATTCGACAAAAGGGAAATGAAATACGACAACGAAAGCAGTTCTCTTAGCAGTAGACCAACTAGAACATGTAAGGGTAACGGCACAACACATGCGGCGGCC
AAAAATTTAGAGCTTGTCCTCGAAATCGGAGAGGGGAGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATATCCTGCACCAGGGTTGAAGCCTGCGAG
CCAGCTTCAAGAGGATCAGAGGTCATCATGTCCCAATGGTCGAACACACACTGGGGGAAGGCCTGTCCAGATGTCGCAGCCCTAAGCTGGCTTGAGAACC
CAAAGGACTCGATGACAGGGAGGTAAGCCTTGATGTTGTACAGAGGGGTACCAGGTAGACGGGCTCAAGAAGCCTGGGCTTTGCTGTGAGCTGAGAAGCA
TAGATGACCCTCCTGGCCGTGGGAATGACCTGGCCACCACCTCTGTGAATAGCATCAGCATGGAGAACAACATCGCACACCTCAAAGCAGATACCACGCA
TGTTCTCCTCAGCCAGAGCACCCTCCTTTGATGCCCACTGGAAACCAGCCACAACGGAATCCTTGATTTCATTCAGATACTGAACTCCCTTACACATATC
AACCACCATGTTGGGGCCAGTTGTCTCAGGTCCAAAACACCAAATCTTCTTTGCAAGATCCTTGTCCCAGCCGAACTCCTCAGACAGGATCTTGGAGCGC
ACCTTGGGATCATC