CANTATAdb - search

Detailed information on CNT30575108

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691495	Oryza barthii	Oryza sativa	98.39	80.27	97.34	1652	forward
CNT30552873	Oryza barthii	Oryza glaberrima	76.24	86.66	99.92	1280	forward
CNT30369691	Oryza barthii	Oryza glumipatula	66.47	83.41	99.73	1116	forward
CNT30603681	Oryza barthii	Oryza punctata	36.33	42.63	89.67	610	forward

Expression of CNT30575108

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEVNFCC*

>peptide 2 (74 aa)
MKIVPSVLIMKAAHVNCLVHPDHLLLFTLIRLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRPVTILSSEL*

>peptide 3 (35 aa)
MLVTLRLQGCNSLTIDCRTDHIKTAAKMVQNRVLC*

>peptide 4 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENL*

Sequence

>CNT30575108
CGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTCCCG
CCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTG
CAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCA
AGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAAC
TCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATTGCAAATGAACTCAT
CAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGGTAAGGAAGTCAAACATCTAATATGTATGAAAATTGTT
CCTAGTGTTCTTATAATGAAGGCTGCACATGTAAACTGTTTAGTCCATCCTGATCATCTATTGTTGTTTACTCTGATCAGATTACGTCGTCTCTACATTG
TGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAG
TAGTGAATTATGAATTTCTAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCAGGAATTTCTCTAGGAATGCCCA
GTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATG
CTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAAAA
TTCCAGCTTTTATGAAGTTAATTTCTGCTGTTAACATGCTACCTAGTGCATTCCTAGAATCCTAGTTAGTGTCTTAAACCTTGGTTGATGAGCGTTCCAA
GCTGCTTATCCCTATTCAGCAGAATGCAAGGTTTGTAGGGATTACTATTTGAGAAAGGAAAACCAGTGCCTAGGTGCTTTCTTGAGCATGTAGTTTACTA
CTATACCACCTATGTCCCAAAATATAACCTGGACATTTCCTGTCTAGATTCATAGTCTATTCATAGTCCTATAAAATATTTCTTTCTGTAGTAGTTAGTA
ACATTTTTGAACGGATGTAGTATTTCACTATTTTTGTATCCTCACATGTTCAGCATTCACCTTTGCGGACAAAAAAGGCACATGACATTTTCTTTGAATG
CTTGTTACTCTTAGATTGCAGGGGTGTAATTCATTGACTATTGACTGCCGTACTGACCACATAAAAACCGCTGCTAAGATGGTGCAAAACAGAGTTCTTT
GTTAAAAGATTAGCTATTCTTTTGCATGTACTGTGAACTTTCTATTTCTATTTTTATTTTTATTTTTTTTGTGTTGTTC