Detailed information on CNT30575105


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005371, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554675Oryza barthiiOryza glaberrima40.7836.5992.98655forward
CNT30597093Oryza barthiiOryza meridionalis12.222.1294.39196reverse complement
CNT30109476Oryza barthiiOryza longistaminata29.9531.1994.59481forward
CNT30551654Oryza barthiiOryza brachyantha4.1720.7495.5267forward

Expression of CNT30575105

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MFYNRLYANSHKPSLCSPCTSASLVWLAEYGGCTQPCYYSPFSEV*

>peptide 2 (49 aa)
MNSPRFNPNNYVLLVHICLLFEYWFFSRIIEFVYWLVVRQRMQLPEGEG*

>peptide 3 (54 aa)
MGLCERSCHGLFPVSRGGMSVHGNVSWGCVLWVQLYTSDQSKTIRIAVPAVMCD*

>peptide 4 (56 aa)
MQIATNRPCVPLARLHRWCGLLSTVVVLSLAIIPPFQKCSASELKTKLEDQGSDPS*

>peptide 5 (38 aa)
DGVMRKVLSRPLSGKSWWHVGARKRVVGLCLVGTVVHL*

Sequence

>CNT30575105
GATGGGGTTATGCGAAAGGTCCTGTCACGGCCTCTTTCCGGTAAGTCGTGGTGGCATGTCGGTGCACGGAAACGTGTCGTGGGGTTGTGTCTTGTGGGTA
CAGTTGTACACCTCTGATCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGTGCGATTGACCAGATTCACCGTGATTAGTCCCACCTTAATAAA
TCGACTCAATGCACTGTAGTTCAGGTGGGTTGGTTGGGCCTGTTCAACGTGGTGTAGCGTTGATCAGTGGAGATTTAATGTTACTTTAATTACTCAATAG
TTTTACTGTTTTGCTCAATAAAATGTTTTATAACCGCCTTTATGCAAATAGCCACAAACCGTCCTTGTGTTCCCCTTGCACGTCTGCATCGTTGGTGTGG
CTTGCTGAGTACGGTGGTTGTACTCAGCCTTGCTATTATTCCCCCTTTTCAGAAGTGTAGTGCTTCTGAGCTGAAGACGAAGTTAGAAGACCAAGGCTCA
GATCCCAGTTGAGTTTTGCCTGTGGAGTGGAGCTGAAGCCCCGCTAGGATCGCCTTTTTCCGCTGCTGTCGTTTCTTTTCGGTGCGAGGACTAAGAGCCC
CTTCTGTAAGTATTTTATGCTTTATTTACATTTGGATCTGTTTATTACTTGTCGTTTTGTGTACCCTGGCTGGTCCTGGACAGGGATTTAATACACAAAA
TAGTTTGGAAATTTGGGCTAAATTTCTGGACGTGACACCAATGTTGTATCAGGTGGAATAATTCGGTTGGCATCCATTAACTAACCCACAAATCTAAAAT
ACAGAGCACATAATTGTCAAACTTTTATGAAAACGAATAAAATCCATATATATACATCATGTGAATAATTCGAATAATAGCTTTATGGATAAAATAATAA
TGTAGATGAATCATGGTGATGATATGGTTTATCCTAAATCTCCCCATCCACATAACCATACTATAGCCTTAGGGACCTGACCAGTTTACCTTCATAGCAG
ATTCCTTCCGTAAGCCAATAGTTAGACTAAACCACAGATTAGCAAAATGTGTATCCCATTTGTATTACGATGATTAGCTCCTAAATAAGCCGCCATGACA
ATAAGAATGATTAAGAGATTATCTGTTAGCAAACACGAGTAGTATGAACAGCCCTAGGTTCAACCCTAACAATTATGTTTTGCTTGTGCATATTTGCTTG
TTGTTTGAATATTGGTTTTTCTCACGTATTATAGAATTTGTCTATTGGTTAGTCGTGAGGCAACGTATGCAGCTTCCAGAAGGTGAAGGTTGATCAAGAT
TACATCAAGAATAAGAACTATCCTGAGCAGAGTGTTGAAGAGAAGCCCTTGTTAGTACGCTTGCGTACCTAACAAGTTGATCGGAGTGCGGTTCCATTCT
AGGTCTCGTTCCCCAGTCGACTGCTTGTGGCATGTCAACCGGGCCCTTGATTATTTTATCTTCCGCTGTTGTTTCTCTGATAGTTGTTGGCCTACTTGAC
CCTAATGTAAGCATTTAACTCTCTTAGCCTGAATTCATTCATGATATGTTGTGATTCGGCTATGTATGTGTGTACCAACTACTGATCCAAGGATTGATAC
TGATAA