Detailed information on CNT30575092


BLAST search results

BLAST vs Swiss-Prot:
sp|P85087|GLNA_VITSX, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30302575Oryza barthiiTriticum aestivum18.3138.5293.62141forward
CNT30391155Oryza barthiiTriticum turgidum21.8224.2186.9168forward
CNT30552642Oryza barthiiOryza glaberrima40.2648.44100310forward
CNT30458448Oryza barthiiSaccharum spontaneum17.9220.9193.48138forward
CNT30137282Oryza barthiiLolium perenne15.9728.6786.99123forward
CNT30170Oryza barthiiZea mays12.0833.3389.2593forward
CNT30683585Oryza barthiiTriticum urartu21.8226.4686.9168forward
CNT30100365Oryza barthiiOryza rufipogon38.0549.2499.32293forward
CNT3040612Oryza barthiiMarchantia polymorpha29.7423.3784.28229forward

Expression of CNT30575092

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MERHGELGRTMTRMSWCQEAASGLPDDGGLGDHGGDDVRVHVGRRPAILEVALAVLLRLPADADRGAAARTQLKVLMSAVSCLPVSRRSLPSP*

>peptide 2 (60 aa)
MADEQCSSSSSMQPNRNGMRIFFGVIFFFFSFLFFLLLPAQMQFTRSSDQWSDTASWGGR*

>peptide 3 (34 aa)
QRRHLLKNGGSSNAKATAIGSPASPARTLYKGDH*

Sequence

>CNT30575092
CAACGGCGTCATCTATTAAAAAACGGAGGGAGCAGTAACGCAAAAGCCACGGCTATTGGAAGCCCAGCAAGCCCAGCAAGAACTTTATATAAAGGTGATC
ACTAATAACAATGATGATAAAACCACATGTGGAAAGGAGGACGATGATCCACAGGATGGGACAAGTACCGTAGGTACGGCCATTATTGGAGGATTACACA
AGAGCACCCAAACGCACTCACCCAAAAGACGAAGAAAAAGCTAATCTAAATGGCAGATGAGCAATGTAGTAGTAGTAGTAGCATGCAACCAAATCGAAAT
GGAATGAGAATTTTTTTTGGCGTGATTTTCTTTTTTTTCTCTTTCCTTTTTTTTTTACTTCTCCCAGCACAAATGCAATTCACCAGATCGTCCGATCAAT
GGAGCGACACGGCGAGCTGGGGAGGACGATGACGAGGATGTCGTGGTGTCAAGAAGCCGCTTCAGGGCTTCCAGATGATGGTGGTCTCGGCGATCATGGA
GGTGACGACGTAAGGGTCCATGTTGGACGCCGGCCGGCGATCCTCGAAGTAGCCCTTGCCGTTCTGCTCCGTCTCCCGGCCGACGCGGACCGAGGCGCCG
CGGCGCGTACCCAGCTGAAGGTGTTGATGTCGGCGGTCTCGTGCCTGCCGGTGAGCCGGCGCTCGTTGCCCTCGCCGTAGGCGGAGATGTGCTCCTTGTG
CCTGAGCTTGAGCTTCTCAATGGCGGACTTGATGATCTCGTAGCCACCATCGTTCCTCATCGACTTGGTG