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Detailed information on CNT30575074


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000057, E-value = 2e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690133Oryza barthiiOryza sativa99.0590.7499.68627forward
CNT30105868Oryza barthiiOryza longistaminata82.7854.0896.76524forward
CNT3099497Oryza barthiiOryza rufipogon98.5883.8799.52624forward

Expression of CNT30575074

Peptides detected in this lncRNA

>peptide 1 (62 aa)
KLSPFLSINSLAAFNRASANSIASLIAAAAAAELVLTSESPFALLSFLLSNLDGGCTLMGCV*

>peptide 2 (29 aa)
MGSQGKVLPHLMLNGCLTSCGNLHLHNHS*

>peptide 3 (47 aa)
MEKSGPCFLFHHLQMYHSPLLQLDPLLTCLTYCESQLHNLSEAPPYK*

Sequence

>CNT30575074
AAAACTGTCACCTTTTCTCTCCATCAATTCTTTGGCAGCTTTTAACCGAGCTTCAGCAAACTCCATTGCTTCTTTGATAGCAGCAGCAGCAGCAGCTGAG
TTAGTACTGACTTCAGAATCTCCATTTGCTTTACTTTCCTTTTTATTAAGCAATTTGGATGGTGGCTGTACTTTGATGGGTTGTGTGTGAAGGCTGTTAT
TTGGGACCCTTAAGAATGGGTAGTCAGGGGAAGGTACTTCCTCACTTGATGCTGAATGGGTGCTTAACCTCTTGTGGTAATCTTCATCTTCACAATCATT
CTTAGAAATTGGATGACATATTGGTGTGTGCAGGTTCTGATCAGCCACAGAATCACTACTAGCACTCTTCAGGCTTGAACTTGATGGAAAAGTCAGGCCC
ATGCTTCCTTTTTCACCATTTGCAAATGTATCACAGTCCACTACTACAACTTGATCCATTGCTGACTTGTTTGACATATTGCGAGAGTCAACTACATAAC
TTATCGGAGGCTCCACCATACAAGTAGTCATTTTAACTATATCATCTGGTCTGCCCCTGGTAGCCTTGTTATATGACATACTAAACTGTTTCCCACTATC
CGGAGGAGAGGAGATTGGAGAAAATTCGTCTTC