Detailed information on CNT30575067


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690674Oryza barthiiOryza sativa82.6698.6299.65286forward
CNT30552118Oryza barthiiOryza glaberrima77.17100100267forward
CNT3099801Oryza barthiiOryza rufipogon10065.6599.71346forward

Expression of CNT30575067

Peptides detected in this lncRNA

>peptide 1 (31 aa)
DGPPLRRPEMSSMRELELNPRSSRSSAWWKW*

>peptide 2 (34 aa)
MVVGAGFGSVTSNDGLRTELERSRLRRLLVEESK*

>peptide 3 (34 aa)
GRAAAPAAGDVLDEGVGAEPTVEQVLGMVEVVEL*

>peptide 4 (56 aa)
MTACARSWSVLGCGVSWSRNPSSNLLSARSPLVGQCRRRLPPGFGRQSARQWWPGCP

Sequence

>CNT30575067
GGACGGGCCGCCGCTCCGGCGGCCGGAGATGTCCTCGATGAGGGAGTTGGAGCTGAACCCACGGTCGAGCAGGTCCTCGGCATGGTGGAAGTGGTAGAAC
TCTGAGCCGCCGAGAGGGGATTCCTTGCCGTTAGCTATGGTGGTGGGTGCTGGTTTTGGCTCGGTGACTTCGAATGACGGCCTGCGCACGGAGCTGGAGC
GTTCTAGGCTGCGGCGTCTCCTGGTCGAGGAATCCAAGTAGTAATCTCTTGTCTGCAAGGAGCCCCCTGGTGGGTCAATGTCGGCGTCGTCTTCCACCGG
GATTTGGCCGTCAGAGCGCTCGACAATGGTGGCCGGGGTGTCCTCC