« Back to Oryza barthii search


Detailed information on CNT30575061


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 8e-100

BLAST vs NONCODE:
NONMEST001519, E-value = 3e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Oryza barthiiSetaria viridis47.8552.3592.41435forward
CNT30516889Oryza barthiiJuglans regia29.3744.1382.77267forward
CNT30377262Oryza barthiiArabidopsis thaliana33.7752.5783.71307forward
CNT30617295Oryza barthiiSesamum indicum22.9950.9883.73209forward
CNT30728062Oryza barthiiCorchorus capsularis32.5633.9885.81296forward
CNT30381383Oryza barthiiManihot esculenta20.2410.4784.24184forward
CNT30196370Oryza barthiiPisum sativum25.9624.7686.02236forward
CNT30486254Oryza barthiiOlea europaea20.949.6187.37190forward
CNT30708222Oryza barthiiGlycine max20.7946.986.77189forward
CNT30168132Oryza barthiiPistacia vera13.0928.9584.03119forward
CNT3092760Oryza barthiiSolanum tuberosum37.2948.9982.3339forward
CNT30291318Oryza barthiiTriticum aestivum28.2777.1891.44257forward
CNT30223001Oryza barthiiHordeum vulgare17.2756.4795.54157forward
CNT30562825Oryza barthiiActinidia chinensis37.2961.4184.37339forward
CNT30542792Oryza barthiiBrassica napus15.8433.1886.11144forward
CNT30511058Oryza barthiiSolanum lycopersicum14.9656.983.09136forward
CNT30442409Oryza barthiiAegilops tauschii36.5249.5585.54332forward
CNT30253208Oryza barthiiAvena sativa44.8833.9485.05408forward
CNT30261872Oryza barthiiBrassica rapa42.6843.8482.47388forward
CNT30614070Oryza barthiiArabis alpina20.5713.5389.3187forward
CNT305432Oryza barthiiZea mays20.2450.1490.76184forward
CNT30608822Oryza barthiiGossypium raimondii24.3132.9986.88221forward
CNT30203517Oryza barthiiHelianthus annuus45.2136.5782.48411forward
CNT30627268Oryza barthiiDaucus carota26.9519.7985.31245forward
CNT30681848Oryza barthiiTriticum urartu46.6447.9191.51424forward
CNT30722476Oryza barthiiTriticum spelta41.1455.985.29374forward
CNT30364844Oryza barthiiSorghum bicolor30.9164.4586.12281forward
CNT30595589Oryza barthiiOryza meridionalis49.3998.4698.66449forward
CNT30369403Oryza barthiiOryza glumipatula72.28100100657forward
CNT30433323Oryza barthiiPapaver somniferum37.0730.8981.01337forward
CNT30570854Oryza barthiiVitis vinifera16.574.6388150forward
CNT30706519Oryza barthiiPrunus avium46.3150.7884.09421forward
CNT3033661Oryza barthiiTheobroma cacao21.3493.2786.08194forward
CNT3057373Oryza barthiiAmborella trichopoda25.6342.7582.4233forward
CNT3024558Oryza barthiiPopulus trichocarpa48.5124.1685.49441forward
CNT30322043Oryza barthiiAsparagus officinalis43.0146.7184.65391forward
CNT30149545Oryza barthiiBrachypodium distachyon9.6826.1989.7788forward
CNT3099473Oryza barthiiOryza rufipogon42.1310099.74383forward
CNT30117026Oryza barthiiOryza nivara29.9240.4899.63272forward
CNT30333708Oryza barthiiCynara cardunculus43.7849.1483.92398forward

Expression of CNT30575061

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MARISSAHHVLGIPHLLCELRNSKGTVLLGAT*

>peptide 2 (29 aa)
TISLLLTSISNTAYDTCPRECAGYLPSSL*

>peptide 3 (43 aa)
TQSAYYLRVSQIQPTIHARANARATFLVPCNLQILHTRTNAER*

>peptide 4 (54 aa)
MFLASHICCVSSGTVRARYCWEPRDVSGANPTMKKWRRGKGIRFTASLRRSEFS*

>peptide 5 (64 aa)
MSSASCCSSSSYSPSSSAVASWYCWYSETRSMPWRGLSVECHRHWTSHCWGSTRRSRMSSCSGH*

Sequence

>CNT30575061
ACACAATCAGCCTATTACTTACGAGTATCTCAAATACAGCCTACGATACATGCCCGCGCGAATGCGCGGGCTACCTTCCTAGTTCCTTGTAATTTGCAAA
TATTGCACACGAGGACCAACGCGGAAAGGTAAAATTCATCCGAAATATCAACAATCGCAGACCAGCATCAAGTAATACAGTACCCAAAAAGGTTCCCATA
GCACAGACGAAAATACAAAGCGAAGACATAGGAAGCGGGCGGTGGCGTACGAGGCGGTAATACGGTGATAATGTAAGACGGAAACACCAAGCACACAAAA
CCCTGCCCTAGAACCACCAAGCAAAAGCCACCTTACATGTCGTCAGCCTCCTGCTGCTCCTCGTCCTCGTACTCGCCCTCCTCATCGGCGGTGGCATCCT
GGTACTGCTGGTACTCAGAGACAAGGTCGATGCCATGGAGAGGCCTCTCGGTGGAATGTCACAGACACTGGACTTCACATTGTTGGGGATCCACTCGACG
AAGTAGGATGAGTTCTTGTTCTGGACATTGATCATCTGCTCATCAACCTCCTTGGTGCTCATCTTTCCACGGAACATGGCAGAGGCGGTGAGGTAACGGC
CATGGCGAGGATCAGCAGCGCACATCATGTTCTTGGCATCCCACATCTGCTGTGTGAGCTCAGGAACAGTAAGGGCACGGTACTGCTGGGAGCCACGTGA
TGTCAGCGGGGCGAATCCGACCATGAAGAAGTGGAGACGGGGAAAGGGGATAAGGTTCACTGCCAGCTTACGGAGGTCAGAGTTCAGCTGACCAGGGAAC
CTTAGGCAGCATGTGACTCCACTCATGGTGGCAGAAATCAAATGGTTCAAATCCCCAACTGCATAAAATGGCAAACATCTAGGTGTGGTCAGCTTGAGAG
TCCTGAAGC