CANTATAdb - search

Detailed information on CNT30575040

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30100105	Oryza barthii	Oryza rufipogon	20.65	1.97	89.22	102	forward

Expression of CNT30575040

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSKQLLSTTPLTASTLHNILITNNSSVQHH*

Sequence

>CNT30575040
GTGAGATCTTATTGTAAAGATTTAATTGTTATGAACACAACGGTGTAATCGGATCGTAGATCGAATAAGTAGTTTAAGAGAAAATTGTATTTGAAATATA
GGTGGATGATATCTATTATAGATAAAGTGGTACCACTAGCTGTGTAGTTATGTCCAAACAACTACTCAGTACGACACCACTGACAGCATCCACACTACAT
AACATACTAATAACAAACAACTCCTCAGTACAACACCACTAACAGCATCCACACTACAACCGCACTACATGAATATGGCGGATCTATAGTTTTAACTTAG
CATAGCAATAGGAATACAGGATAGCCTGAGGGTATACAAGCTGTTCCAGACACAGTAGGATTTGAAGTACAAAATGTAGTAGTGCCCTCCCGCCTCCGGC
GATTAGCAGGCATCATTCATTCCCAATAAACATGTAGAACGTCGAGGTCCTCGAGGATTCAGGCTGCTTGTTATTCCCATGGCCTTCATTTCCT