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Detailed information on CNT30575036


BLAST search results

BLAST vs Swiss-Prot:
sp|A5H8G4|PER1_MAIZE, E-value = 2e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523062Oryza barthiiSetaria italica10.5130.6188.79116forward
CNT30552443Oryza barthiiOryza glaberrima36.8754.19100407forward
CNT305663Oryza barthiiZea mays8.7937.8984.5497forward
CNT30363300Oryza barthiiSorghum bicolor20.654883.33228forward
CNT3099522Oryza barthiiOryza rufipogon34.424691.05380forward

Expression of CNT30575036

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MTGSHQNTRPNTETQSKTENKLNNNKKKKLPLQQLLFSRKAAASNTDRSQTYC*

>peptide 2 (33 aa)
MPSRAAKARMSAQETVLGHAASTAALAASITSKP

>peptide 3 (82 aa)
MAASSSSALALLLLTTLQLSLTSPCVVPVFTSMPPIFTMAFTNLLFHRVSLLTNSSTDALSVALVSSAWSDVKRPRLLATPT*

>peptide 4 (54 aa)
MVWAPESTTMSSAVSDLLAKLATSSVAVDVGWGRLSRASWAMETLPSRRPAGTW*

Sequence

>CNT30575036
CGCATTGCTGCAACTTGCATATTGAATATGCAATTGAATCATGCATGCTATTTTATTAGCAGTTGGTAATTACGTTCAATGTAGTCTATAATGGAAACTG
AATATGCAATTCGTCAACATTTCGCCAAATTTTTTCCTTGATTCATGACAGGTTCGCACCAAAACACTCGCCCAAACACTGAAACACAATCCAAAACAGA
AAACAAATTAAACAACAACAAGAAGAAAAAACTTCCTCTCCAGCAACTCTTATTCTCGCGAAAAGCAGCAGCTAGCAACACCGATCGATCACAAACTTAT
TGCTGAAATCTCTGAAGAACACCACATCAGCTACTACCTTAATTAGCTCGCTGCCACTTGATCCCCATCATCCATGGCGGCGAGCTCGAGCTCAGCGTTG
GCGCTCCTCTTGTTGACGACCCTGCAGTTGAGCCTGACCTCGCCCTGCGTCGTCCCGGTCTTCACCTCGATGCCGCCCATCTTCACCATGGCCTTCACGA
ACTTGCTCTTCCACCGCGTCTCGCTCTTGACGAACTCGTCCACCGACGCCCTCAGCGTGGCGTTGGTGAGCAGCGCGTGGTCCGACGTGAAGAGGCCCAG
GTTGTTGGCGACCCCGACGTAGTACCGGTTGTCGAGCGCCGCCGGGGTGATCACGTCCATGTCCACCGTCGTGTTGGGGAAGAACTGGCTGCTGTTGGAG
GGGCACACGGCGCGGAGGAGGAGCGCGTAGGCGGAGCTGATCGCCGGGTCGGCGTCGCCGACGCCGGTGAAGTTGTAGAGGCGGCTGGTGAAGGAGTCGC
AGTGGGAGACGCCGATGGTGTGGGCGCCGGAGAGCACCACCATGTCCTCCGCGGTGAGCGACTTGTTGGCGAAGTTGGCGACGAGTTCCGTGGCGGTGGA
CGTGGGCTGGGGGAGGTTGTCGAGGGCGTCCTGGGCGATGGAGACGTTGCCATCGCGGCGGCCGGCGGGGACCTGGTAGTCGACATTGCCGGTGAGCTTG
ATGCCGTCGCGGGCGGCGAAGGCGAGGATGTCGGCACAGGAGACGGTGCTCGGGCACGCGGCCTCGACGGCGGCCTTGGCGGCGTCGATCACCTCGAAGC
CCCG