Detailed information on CNT30575025


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552308Oryza barthiiOryza glaberrima75.8383.71100822forward

Expression of CNT30575025

Peptides detected in this lncRNA

>peptide 1 (60 aa)
DFVISSDASPSHPIFFLFYRCCRFTTCIAYTSGEKKRERERKNRHQLTTVKGEKGEVSRE*

>peptide 2 (85 aa)
MIWLFYHFYYFFSIGFEYETLVLCLFVIIFPQPSVVREFLLSISNDGVVRELGGGVVVRCGWDRCIESQVLELLKPQFNIVVLEPL

>peptide 3 (31 aa)
MKIVHQFGTTKKDLIRSQCWRKEMRDVMDCT*

>peptide 4 (37 aa)
MPPTMSWSANAPNGLTSLGFMFILEKGDEDCTSVWNY*

>peptide 5 (49 aa)
ILSYRATRLRVIQSSSSFTDAAASPLASHIPVERKKEKGKEKIATNSPP*

>peptide 6 (59 aa)
RFCHIERRVSESSNLLPLLPMLPLHHLHRIYQWREKKRKGKKKSPPTHHRKRGKGRGEP*

>peptide 7 (31 aa)
MLVLCFSFCERIWHGSMNYGDEVFVMDCTHH*

Sequence

>CNT30575025
CGATTTTGTCATATCGAGCGACGCGTCTCCGAGTCATCCAATCTTCTTCCTCTTTTACCGATGCTGCCGCTTCACCACTTGCATCGCATATACCAGTGGA
GAGAAAAAAAGAGAAAGGGAAAGAAAAAATCGCCACCAACTCACCACCGTAAAAGGGGAAAAGGGCGAGGTGAGCCGTGAGTGAGGGGAGGGCAGGAAGT
GTGGTTAGGGTTTCGATCCTCCCCCATGGACACCTGCGACCTCATCTTCCTCTGCCGCGGCTAGGCGTTTGGTGGGAAGTACATAGCGACTGTGCAAATT
GCTCAAGGAGCGGCAGGGTCGGGTGACTGTGCAGATTGCTTGGGGAGCAGCGGTTGGTGTCGATGCCACCTACAATGAGCTGGAGTGCAAATGCCCCTAA
TGGCCTAACGTCCTTGGGGTTCATGTTCATATTAGAGAAAGGAGATGAAGATTGTACATCAGTTTGGAACTACTAAAAAGGATTTAATAAGATCTCAATG
TTGGAGAAAGGAGATGAGGGATGTGATGGATTGTACATAACTTTAGAACTAAAAAGAATTTTATAGGATCTCAAGATGCAGCTTGTTGGTTTTCAGTGGT
TTCATGCTTGTTTTGTGCTTCTCATTTTGTGAACGAATCTGGCATGGATCTATGAATTATGGAGATGAAGTGTTTGTGATGGACTGTACACACCATTAGT
ACTAAAAGAATTTGGGGGTCTTAGAAGAAAAAATAATATACAGTTTAGGGATGAATTCCAATTTGATGCTTGTATCTAACATGGATTTATGAATTTGTAG
GGATGCAAACTTAGCATCAGAAGTTTATGATTTGGCTGTTTTATCACTTTTATTATTTTTTTTCCATTGGATTTGAGTATGAAACCCTAGTTCTCTGTTT
GTTCGTGATTATTTTTCCTCAACCTTCTGTTGTCCGTGAGTTTCTTCTGTCAATTTCTAATGACGGTGTTGTTCGTGAGTTGGGTGGAGGCGTTGTTGTG
AGATGTGGCTGGGATAGGTGCATCGAGAGCCAAGTCCTTGAGCTCCTTAAGCCACAATTTAACATAGTTGTCCTAGAGCCCTTG