CANTATAdb - search

Detailed information on CNT30575023

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30369385	Oryza barthii	Oryza glumipatula	87.51	43.71	99.27	820	forward
CNT3099740	Oryza barthii	Oryza rufipogon	87.51	37.96	99.63	820	forward
CNT30115671	Oryza barthii	Oryza nivara	85.38	85.11	99.62	800	forward

Expression of CNT30575023

Peptides detected in this lncRNA

>peptide 1 (64 aa)
QPRRPMLVYRSPMKDLGFGGSHPPDFLSRSGGGGVVRRGHTQVVVRTARGEVERRASSSLFSSP*

>peptide 2 (31 aa)
MSLSPSSYRPRQRYIAPTRSRKFLSSLMIPM*

>peptide 3 (46 aa)
MGDWEPALLDVSLTLILSPASTIYSANQVQEVLKFFDDTHVADLLR*

Sequence

>CNT30575023
GCAGCCCAGGAGACCCATGTTAGTCTATCGCAGCCCAATGAAGGATTTAGGGTTCGGTGGGTCTCATCCTCCTGACTTCCTGAGTCGGAGCGGCGGCGGC
GGCGTAGTGCGGCGCGGTCACACGCAGGTGGTGGTAAGGACAGCGCGCGGCGAGGTGGAGCGTCGTGCATCCTCTTCACTCTTCAGCTCACCATGAATAG
CATCCACCGTCTCCCCTCATCGACCAGCTGCTGGCAACATACGTTTCTATCAGCAGCTAGCTGTCCTAGCTAGCCTCATCAGTTTAGCGCATGGATGGGA
GATTGGGAGCCGGCACTGCTCGATGTCTCTCTCACCCTCATCTTATCGCCCGCGTCAACGATATATAGCGCCAACCAGGTCCAGGAAGTTCTTAAGTTCT
TTGATGATACCCATGTAGCTGACCTTCTTCGATGATACTTTGTTCCCATATCTGATTGGTTGATGTTGATATACATTGCAATGTGTACGCACCAAACAAA
GCAGTTGTTGTGTTCCTCTACATAGAGATTTTTACATCATCTCTGATATGTCTCATGTTTCTGTTAATTATCTCCTATCCCAGTCCACTTTCATGGGCTT
TAAAGCTGCACTGCCAGTAAATTGAGGTGGTAAGCAGCCATCGAATCATCCGCTCCTAAAATTCTAAGCATTCGTGACAAGTTAATAGATGCTACACTAA
GACCTTGACTTTGCAACCTTCAGTCTCTAATTCTCTGCATGCATCATTTACTCCAGAGTTCTAATTAACAGGATTTCAGGTGAAGGCCATCTGTGGATCC
AAAATATATTGTTCTTTGGCTAAGATTTTAGGTCTGGCTGTTTTTCTCCATTTCATATAAGCTTTTTGAAAATATCCCATATCAAATATTTCTATTTGAG
AAACTATCTGGATACTTTGATTAATGTAACATCCCGG