Detailed information on CNT30575011


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693084Oryza barthiiOryza sativa13.2682.7294.53402forward
CNT30552454Oryza barthiiOryza glaberrima80.6178.4699.592444forward
CNT30596399Oryza barthiiOryza meridionalis59.277.4489.861795forward
CNT30109481Oryza barthiiOryza longistaminata62.1494.5894.161884forward
CNT30117985Oryza barthiiOryza nivara60.82100.2792.791844forward

Expression of CNT30575011

Peptides detected in this lncRNA

>peptide 1 (70 aa)
AAPVASRRHLGHRVAASHPRTRVLSPSPHRVLSTVSFREVAEPRLSLSLAFHRHHRVTSLASHRSESPTP*

>peptide 2 (92 aa)
MPLWFGYVLSLRTDSFGKSIRTRYSATTRVFMGCLWPSKLLSHRSWCANGCGMPRMRRRSVTHLLPIMDVFLPLLWRGTSRSRRHPRYFLSG*

>peptide 3 (42 aa)
MMRSHAFVVWLRIIVKDRFLWEIHPNTLQCDHTGIYGMPLAK*

>peptide 4 (40 aa)
MKMKTSTRPPRSISKSKPSMKTFKCFVPSPKPRLWNKLVA*

>peptide 5 (33 aa)
MTPTLCKASLFDHIAPIFTMICCLKNALLSSHD*

>peptide 6 (65 aa)
RRSRRLAPSPWPSRCRLTSADARPLAIASPRLVDCLLPGSRRAASLPLSRVPSPPPCDVARVTSI*

>peptide 7 (58 aa)
MFRRRSRSPRVVSRRVAPSPSPSRRCSRIAAFCRRDLADAVPPQRRRVDIPSVPGIPP*

>peptide 8 (57 aa)
MRFSWVSFGKALSRISGTGQYRCKFRVVWVKRTTSAEINELFEQPYPRSRAGVRCFS*

>peptide 9 (56 aa)
PLPSPRAVTLAIALPPHIRGRASSRHRLTASCRLSPSGKSPSRVSPSLSRSIATTV*

Sequence

>CNT30575011
CGCCGCTCCCGTCGCCTCGCGCCGTCACCTTGGCCATCGCGTTGCCGCCTCACATCCGCGGACGCGCGTCCTCTCGCCATCGCCTCACCGCGTCTTGTCG
ACTGTCTCCTTCCGGGAAGTCGCCGAGCCGCGTCTCTCCCTCTCTCTCGCGTTCCATCGCCACCACCGTGTGACGTCGCTCGCGTCACATCGATCTGAGA
GCCCTACACCTTGATTCCCGGCCGTAGCCGTCGTCGGCCACGCGTCACCCATGTTCCGCCGCCGTTCCCGCTCTCCGCGCGTCGTCTCGCGTCGCGTCGC
GCCGTCGCCGTCGCCATCGCGTCGCTGCAGTCGCATCGCCGCGTTCTGTCGCCGTGACCTCGCTGACGCCGTGCCACCGCAGCGCCGTCGCGTCGACATC
CCCTCCGTCCCAGGAATCCCGCCATAGCAGCTAGCTGGCTACCCGCGAAATCCCGCGTCTAGACCGCCAGCTCGACGCCGCGTCGCCCGCCTATAAAAGG
AGACAAACCCGAGTTCCTTCACCCCCACACCATTACCATCCATTGCCATCTCTCTCTCCTCTTTCTCCTCTCTTGATTTTGCTCTCTCTGTGCCACCGCA
TTTGCTCTACCGGGTCGCCGCGCCTTCTTTCCTAGAGCCGCCTCCGCCGTCGGAGCGTCGCCGGAGGTCCCCGCCGCTCCCCTCGGCCGCCGGACGCCCA
GCCGTGCACGCCGCCGCGACACGCCCTCGGGCCGAGCCGAGAAGAGCGAGAAGAGGAAGGAGAAGCCGAACCGCGCCCTCTCTCCAAGCGCCGCCGTCGC
CGGCGGAGCCTCACCGGAGGTCGCCGCCGTCTCCCCTGGCCGCCGGTTGTCTCGCGGCGCCTCGCCGCCACGGCGCCGTGCCGCCCCGAGCCGAACCAGT
GCGGGAGAAGGAAGACGAAGACTTCCCCAGCCGCTGACAGCCCGGCCCCGCACCTCTCTCTTTCCATCAATCGCTGACAGCCGGGCCCCGCGCGCCTTCT
TCCTTCTATCAGCCGCCGACAGCTTTGTTTTCGCGTTAAGAGCCCGAGTTCGAAGAAGCCCTGGACGCCGCTTTCGAAGGAGATGACCCCAACCCTGTGC
AAGGCAAGCCTCTTTGATCACATTGCCCCTATATTTACAATGATATGTTGTTTGAAAAATGCATTGCTTAGTTCACACGATTAACATATTTAGGCCTCGG
ATTGTTTATACAACCGACGGACCAACCTAGTAGACGCACTTATATTACATAGGTTGATGTTTCCATACCTTTGATAGCTCCACAAATATTTGCGCTGGAA
TCGTTATACGATTACCGAGGTAGTTTCGCTTAGCCATGCTTACGTTGTTGCCGTGTGGGAAACTTGAGATATTCCAAATACATGTTTAAAAATCCGGTAC
GTTGTACGGAGGAGTTGTGAAATAAAATGTGTTGTGAAAGTGGTGATGATGCGGAGTCATGCCTTTGTGGTTTGGCTACGTATTATCGTTAAGGACCGAT
TCCTTTGGGAAATCCATCCGAACACGTTACAGTGCGACCACACGGGTATTTATGGGATGCCTCTGGCCAAGTAAATTGTTATCACATAGGAGTTGGTGTG
CCAATGGTTGTGGAATGCCGAGGATGAGGAGACGAAGTGTTACACATTTATTGCCCATCATGGATGTCTTTTTGCCTCTATTGTGGCGTGGTACCAGTAG
GAGTAGGAGGCATCCTCGGTATTTCCTGAGTGGATGATGACTGTTATTGCCTAATACTCGGCTATGGATCTTAGCCCAACAAGGTGACATGCGATTTTCA
TGGGTTAGCTTTGGAAAGGCCTTATCAAGAATTTCCGGTACCGGCCAGTACCGGTGTAAGTTTCGTGTCGTGTGGGTAAAGCGTACAACCTCTGCAGAGA
TTAATGAACTGTTCGAACAGCCGTACCCACGGTCAAGGGCGGGTGTAAGGTGTTTCTCATAGCGTAGATTTGTTTGACAAATGTCTGTGAAGAAGTGATT
ATTGGGAAGGGTAACGTTTCCAGAGTCCGCCTGTGTGGCAGACGGCTAACCTGGGTGGTTAGGAACGGATCTGTGTGACCTGGGGTGTCGTCCGACACCG
AGGTGTTGTTAGGGCCATGATGATGGCGTTGTTGTGCTAAGATAACTGTGTGGGCTATGTGTTGTTGTGAAAGTGAGAAGAAGCTAACAGAGGAAACAAA
ATAATTGTTGTTCGTTAATCGTGACAAGTTGTTGCAAAGCAACTTGTGGAATGGTTCGAGGCGTGAGCCTCCTCCCGACAACTAAAACTTGACTCACTCA
CTAGGAGTTTTGTGAAATAAATCACTTTGCCAAAAAGGCAGCTTTCGCAAATAAAACCTTAGCCTCCTTGTTTAAACCTAACATGTCATTCTTTTCCCTG
GCTTGCTGAGTACGTTAAGTACTCACCCTTGCCCATATAATAATCTATAGAGTATGAAGATGAAGACGTCGACCCGACCGCCGAGGAGTATCTCCAAGAG
CAAGCCGAGTATGAAGACTTTTAAATGTTTCGTGCCTAGCCCCAAGCCTCGCCTGTGGAATAAGTTAGTTGCCTAGGTTCTTTGCCTAGTGCGTAGTTGC
TTAGTCGCTTAGTTTCTCCGCGTTATTCGCTTCTGCGCCATCGTTTTTATGTTTTTCTATGCTGTTGTGTTGCTCATCTATGGGCCTGTCTATGATGGCA
ACGTTTGTAAGGACTACTACCCAGTGACGTAATAAAGCAGTTTACTTTGATTCCACATTTATTCTGTATGTACAAGATAGTGTATCCTGGGACTGGTACT
ATATCACAGGTAATGCATAACACCCTGATATAAGTTAGTTGTGTTTATGGCTAACAAATATCGGGGCGTTACAGATTGTCCATGCACTTTACTCTAATTT
TAAATACCTCTTAAAATATTGTTCAACGACAAGAAGAAAATACATACTTGACCGATCTGATGTAATTTCATATTAGCGGGCTACATCATATTCTTTTTCA
CATGACAACGTCATACCTTAGATCTCAATCCG