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Detailed information on CNT30574949


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6I544|GL52_ORYSJ, E-value = 7e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618191Oryza barthiiSesamum indicum25.0713.4189.08174forward
CNT30552278Oryza barthiiOryza glaberrima74.7858.8498.65519forward
CNT30661706Oryza barthiiTriticum dicoccoides31.1233.3383.33216forward
CNT30595500Oryza barthiiOryza meridionalis48.1352.3599.1334forward
CNT30117848Oryza barthiiOryza nivara66.4363.4198.26461forward

Expression of CNT30574949

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRARETPRVLSPGTFSTLAPVTTAPVVVSATQMSWR*

>peptide 2 (62 aa)
MIVLIINKSSSFSPATYYKKLLYYYYILHVALTQISVIKMALYHRQVHIFKTSNLSNVYVVL*

Sequence

>CNT30574949
ACAGATAGAATCTTCCTCATCTTCCAGCCAAAATGATTGTACTAATCATTAACAAATCATCATCGTTCTCCCCAGCAACTTATTACAAGAAACTTCTCTA
TTACTACTACATTTTGCATGTCGCTCTTACACAAATAAGTGTCATCAAGATGGCATTATATCATCGACAAGTACATATATTTAAAACCTCAAATCTCTCC
AATGTATACGTCGTCTTATAATCTTATACTATCTTCTAGGTCTTCTTGGGGGCAAACTTGGCCTTGATCTTGTCCACCTCCTCGTCGTCGATCTGGAAGG
CCTTGGCGAGGACGGCGCCGCGGGGGAAGACGAAGACGTCGCCCTGGGAGATGGTGCGGGAGAGGAGCTTGTTGGCGGTGGTGACGAAGCCGACGTCGAG
CTCGCCGTAGAGGACGAAGACGACCTCGGTGGCGCGCGGGTGGGTGTGCGGCGGGTTGAGGCCGCCGGGGGCGTAGTCGATGCGGGCGAGGGAGACGCCC
AGGGTGTTGAGCCCCGGGACCTTCTCGACGTTGGCGCCGGTGACCACGGCGCCGGTGGTGGTGTCGGCGACGCAGATGTCCTGGAGGTAGTCCGGCCCCA
GCCATCCTGCTCGCTGATCTCTCTCGCCTGCTAGCTGCGCTCTGCTCTTCTTCTGCTCGCCGATGGTTAATTGATTGATGTGTGTTGACCACTT