CANTATAdb - search

Detailed information on CNT30574938

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552163	Oryza barthii	Oryza glaberrima	68.51	45.93	100	372	forward
CNT30369201	Oryza barthii	Oryza glumipatula	98.16	57.75	99.81	533	forward
CNT3099748	Oryza barthii	Oryza rufipogon	102.95	49.69	96.96	559	forward

Expression of CNT30574938

Peptides detected in this lncRNA

>peptide 1 (57 aa)
GLVASSTDDGEGWANGAAEVEDDEDAVGVGVAELAGEAEEATPRRRFSSAKLREADW*

>peptide 2 (29 aa)
LAWWLRAQTTAKGGRMARQKSRTTRTQSE*

>peptide 3 (36 aa)
WLGGFEHRRRRRVGEWRGRSRGRRGRSRSRGRRTSR*

Sequence

>CNT30574938
CTGGCTTGGTGGCTTCGAGCACAGACGACGGCGAAGGGTGGGCGAATGGCGCGGCAGAAGTCGAGGACGACGAGGACGCAGTCGGAGTAGGGGTCGCCGA
ACTAGCAGGTGAGGCAGAGGAGGCCACACCACGGCGGCGCTTCTCTTCGGCGAAGTTGCGGGAGGCAGACTGGTAGCAGGTGCTCCCAACCTTGCCGATG
TTGGCGTAGGCAGCGACGGTGGACGCCGGAGAGGCCTGCTTCGTCGACGAAGCTGGCTTGCCAATGAAGAGCTCAAAGTAGCGCTTCTTTGAGGCGGCGC
CGGCGTCCTCGTCGTCGTCAGAGTCGGAGTCCGTCGCGTCAGGGTCCTCGAACACGACGCGGACGCGACGGCTTGGCTGCAGGGAGGCCGCCGCCGACGG
CACATGGGGCCTGGAGAAAGCAGCAGAGGGTTTAAGGCCAAACCCGGATAGCCTCTTCGTCTTGGGCTTCTTCGCCATCACCTTCTTGAGGAGCATCTGC
TGCTGCTTGGAAGGGGCCATTTCTCTCTTCTTCTAACTCTTGC