Detailed information on CNT30574923


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000696, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689928Oryza barthiiOryza sativa64.3276.4599.44357forward
CNT30552031Oryza barthiiOryza glaberrima50.6359.53100281forward
CNT3099732Oryza barthiiOryza rufipogon52.2559.4398.97290forward
CNT30115624Oryza barthiiOryza nivara49.3759.57100274forward

Expression of CNT30574923

Peptides detected in this lncRNA

>peptide 1 (40 aa)
TERVILMTKHARLSRKENVTCQKTSGFLSGFTLELHFIQA*

>peptide 2 (39 aa)
MTNLWVADETFCQLRIDASILLHCFHLYKTTTLLARNHG*

>peptide 3 (53 aa)
MKLFVSCGLMLASYFTAFTFTRPPPCLQETMGDPSFFSLFSFTNQIKTWIKVI*

>peptide 4 (49 aa)
DRESNTHDQARTPVKKGECHLSENIRISQWIYIGVAFYSGMRGEKWQLN*

>peptide 5 (35 aa)
MSLVRKHQDFSVDLHWSCILFRHEGGKMAVKLVTG*

Sequence

>CNT30574923
GGACAGAGAGAGTAATACTCATGACCAAGCACGCACGCCTGTCAAGAAAGGAGAATGTCACTTGTCAGAAAACATCAGGATTTCTCAGTGGATTTACATT
GGAGTTGCATTTTATTCAGGCATGAGGGGGGAAAAATGGCAGTTAAATTAGTTACAGGTTGATAGGAAATGGAGAGATTATTACAGGCCAAAGAGATCTT
ATTAATCTGGCCTGTTTTACAGTTTATTTTTTTTCTTTGATGACAAATTTATGGGTGGCTGATGAAACTTTTTGTCAGTTGCGGATTGATGCTAGCATCT
TACTTCACTGCTTTCACCTTTACAAGACCACCACCTTGCTTGCAAGAAACCATGGGTGATCCTTCTTTCTTTTCTCTTTTTTCTTTCACCAATCAGATCA
AAACCTGGATCAAAGTTATCTAACTCTTCAGGAAATGAGGTCATTTTCATAGTCGGCAGATTTGCAGTATCTCTAACGAATTCGCATCAGATTGGATGCA
CATCTTATGCTGAATCCCTTTACTCTCTTGTGTCCTAACCAGGTTTTGATAGGTT