« Back to Oryza barthii search


Detailed information on CNT30574891


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369190Oryza barthiiOryza glumipatula100.7591.1798.7537forward
CNT30115791Oryza barthiiOryza nivara94.1899.2199.4502forward

Expression of CNT30574891

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MECLKCELHTCTKKGILSSYPITSGTSVLCWYLKSFLLFRFLYT*

Sequence

>CNT30574891
GAATGAAATAAACTAAAAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAA
GCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTCTGAAGTGTGAACTACATACATGCACTAAAAAAGGTATTC
TTTCAAGCTATCCCATCACTTCTGGCACATCTGTGCTTTGCTGGTATTTAAAATCTTTTTTACTCTTCCGTTTCCTGTATACTTGAATAAATAATCAACT
GGAGATGCAGATCTCAGACGATAATAAATGGACCTGCTCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAATTATCTG
TGGGCTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACA
ATAATATCACATCCTCTTCATAACAAATCAGCG