Detailed information on CNT30574883


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674416Oryza barthiiSetaria viridis20.4120.3595.6569forward
CNT30523073Oryza barthiiSetaria italica20.419.6295.6569forward
CNT30249419Oryza barthiiAvena sativa21.67.4387.6773reverse complement
CNT3015172Oryza barthiiZea mays22.4911.9990.7976forward
CNT3066598Oryza barthiiLeersia perrieri33.4318.7791.15113forward
CNT30369164Oryza barthiiOryza glumipatula105.0386.1793.52355forward
CNT3099716Oryza barthiiOryza rufipogon83.1449.6596.8281forward
CNT30115583Oryza barthiiOryza nivara84.0268.4390.49284forward
CNT30603545Oryza barthiiOryza punctata34.9122.3996.61118forward

Expression of CNT30574883

Peptides detected in this lncRNA

>peptide 1 (47 aa)
HTIREIQNSDRPVIIRTSFIIFRSRIYFSYTPLSVRSDRTEKKVLIS*

Sequence

>CNT30574883
ATCACACTATCAGAGAGATTCAGAACAGTGATCGACCGGTGATAATTAGGACAAGCTTTATTATATTCAGGTCACGAATTTATTTTTCATACACCCCCCT
CTCTGTTCGTAGTGATCGCACAGAGAAGAAGGTGCTAATTAGCTAAGCTCCGTGTTCGATCAGTCGGACTTGAGCAGGAAGCTCTGCTTGCGCTCGCGGA
ACTCGCCGGTGCAGGTGTTGAAGTCCTCCTCCACCTTGGTCTCGCGCACCATCAGGTAGTCGTTGCCGTGGTTTTGGGGAGTGAGGTGAGGTGGTGTTGT
GATGAGCGAGAGATGGTTAATTAGGGTTTTGGTGGTGT