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Detailed information on CNT30574860


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000279, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690513Oryza barthiiOryza sativa10035.2299.331045forward
CNT30552455Oryza barthiiOryza glaberrima10088.8699.91045forward
CNT3099989Oryza barthiiOryza rufipogon10067.4299.331045forward

Expression of CNT30574860

Peptides detected in this lncRNA

>peptide 1 (40 aa)
PPLPRQRRRPPLRRLPHPTPATPLAVAGLNQLLGSSLLCP*

>peptide 2 (35 aa)
MWFSSSFRNPSLLFYCCSSGSKVILLLGSCSTGNT*

Sequence

>CNT30574860
CCGCCGCTTCCTAGGCAGCGCCGGCGACCTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTG
GCTCCTCACTTCTCTGCCCCTAAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAG
TTTCCCAGACCCCTACCGCTGGATCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATCCTACCGTGATTGAAAAATATGTGGTTCAGCTC
CTCCTTCAGAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTT
CCTGACAGGATCTGCTACTGATTTGGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATTGGTTTGAGCTGGACTTCA
GTTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTGCTAAGCTTGGTTCTATGATTCTAACTACTACTGCCGCAGCTGCTGCTATTGCT
CTACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGCTTGGTTGATATATATGTGAATTTGGTGAAGACT
AGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAACGTGGGATTTCACTAAATTTTTCTA
GTTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCAGGGTCTCTAAAATTGAAGGTTACTCTGAGATTAGGGACTGATTTGTAATTG
TTCTAGAACTCAAGAGTTTTTCTGAAAACTAAATAATTATTGAATCTTTGACTGAGATGGTTCAGTTTATGATATGATATCCATAAGCACCATGCATATG
CACAATATATGTGATGCATACTGTATAAAATTTCTAGAGAACATG