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Detailed information on CNT30574855


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552148Oryza barthiiOryza glaberrima99.0776.7599.87746forward
CNT30369267Oryza barthiiOryza glumipatula86.1981.5397.84649forward

Expression of CNT30574855

Peptides detected in this lncRNA

>peptide 1 (73 aa)
KKTGGSLLQALAATSPASYHRRRCSCLRRRRRRRRFSRRRPSPPHPLVSLRGLLLDAAASIRDEKAPDSTGSS*

>peptide 2 (54 aa)
KNRGIAPASPSRHISCVLPPPALFLSPPAPPPPPVQPSSSFATPSARLLAWLAA*

>peptide 3 (33 aa)
MDKLCYFVPNDIDRHGAGVAPLDYTLLLHTIGI*

Sequence

>CNT30574855
AAAAAAACAGGGGGATCGCTCCTGCAAGCCCTAGCCGCCACATCTCCTGCGTCCTACCACCGCCGGCGCTGTTCCTGTCTCCGCCGGCGCCGCCGCCGCC
GCCGGTTCAGCCGTCGTCGTCCTTCGCCACCCCATCCGCTCGTCTCCTTGCGTGGCTTGCTGCTTGACGCTGCTGCATCGATCAGAGACGAGAAGGCTCC
AGACAGCACAGGAAGCAGTTGAACAGGAGTAACAAGGGAAGGAAAAGGTATGGAGGGTTCCAACGTTGGAGGAGTTGAGTCGGAGTATTGAAGGAGTTAA
AGCAAGTACAAGACGGACTTGTGCGATGGATAAACTGTGTTACTTTGTACCAAATGACATTGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACA
TTATTATTGCACACTATTGGAATTTAGTTTTAGATTATGTTTCTGCTTAGCATAAGTTTTGCGTAGAACTTGTAACGGTCATTTAAAGTTCCGGTCCTTA
TTTTCACGTGGAATTTGAGGAGCTAGGATGGTTTGGATTGTGTGGATTATATCGTTATTGAGTTATCTTATAACTGACTGTCGTGGATGTCCGTAATTTT
AGGAGGAGACTGCCGAAATTTCTAATAATTTTCGGAGTTAGTGGTTTTTGAGTGTATTTTGGTGTGGCACTCTAGGTACGTGGTTACCTGGGATGTTACA
TAGACACCAACAGAAGAAAAAGATCCCCTAACTACTTAATTCTATTAGAGAAC