Detailed information on CNT30574848


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690702Oryza barthiiOryza sativa100.4210098.75240forward
CNT30728922Oryza barthiiCorchorus capsularis22.1819.5690.5753forward
CNT30552070Oryza barthiiOryza glaberrima100100100239forward
CNT3066610Oryza barthiiLeersia perrieri100.4299.1792.92240forward
CNT30595512Oryza barthiiOryza meridionalis98.7498.7496.19236forward
CNT30369412Oryza barthiiOryza glumipatula101.2610097.52242forward
CNT30107154Oryza barthiiOryza longistaminata10010098.33239forward
CNT3099525Oryza barthiiOryza rufipogon100.4210098.33240forward
CNT30115824Oryza barthiiOryza nivara10010099.16239forward
CNT30603505Oryza barthiiOryza punctata98.7498.7493.64236forward
CNT30551841Oryza barthiiOryza brachyantha100.8497.1885.89241forward

Expression of CNT30574848

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRPRRRGKSQRSRPPLREGAETRVEPFGREPRS*

>peptide 2 (78 aa)
RAHDEVSGLFEALESPRALNRRDAAAETRKVSALAPSSSRGGRDTCGALRARAEIIMANYTVIHLIHLRINRTGLTIVC

Sequence

>CNT30574848
CGAGCACATGACGAAGTGAGCGGGCTCTTTGAAGCCCTGGAAAGTCCCCGGGCCCTCAACCGCAGAGATGCGGCCGCGGAGACGCGGAAAGTCTCAGCGC
TCGCGCCCTCCTCTTCGCGAGGGGGCAGAGACACGTGTGGAGCCCTTCGGGCGCGAGCCGAGATCATAATGGCCAATTACACAGTTATTCACTTGATCCA
TCTCCGGATTAACAGAACGGGGCTTACGATTGTGTGCAA