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Detailed information on CNT30574837


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552300Oryza barthiiOryza glaberrima100.3490.1199.66592forward
CNT30595494Oryza barthiiOryza meridionalis10090.2191.19590forward
CNT30369446Oryza barthiiOryza glumipatula94.9293.9696.43560forward
CNT3099710Oryza barthiiOryza rufipogon102.3794.8297.19604forward
CNT30115618Oryza barthiiOryza nivara56.163.7895.17331forward

Expression of CNT30574837

Peptides detected in this lncRNA

>peptide 1 (47 aa)
HTIREIQNSDRPVIIRTSFIIFRSRIYFSYTPLSVRSDRTEKKVLIS*

Sequence

>CNT30574837
ATCACACTATCAGAGAGATTCAGAACAGTGATCGACCGGTGATAATTAGGACAAGCTTTATTATATTCAGGTCACGAATTTATTTTTCATACACCCCCCT
CTCTGTTCGTAGTGATCGCACAGAGAAGAAGGTGCTAATTAGCTAAGCTCCGTGTACGCACGTACACACGCACGCACGATATACACGTAGAGCTAAGCCA
CCACATGACCACCACGACTACGTACGGGCACACATATACGTACGTACGTACACGGGTACACACAGCAGGTTCGATCAGTCGGACTTGAGCAGGAAGCTCT
GCTTGCGCTCGCGGAACTCGCCGGTGCAGGTAGTCGTTGCCGTGGTTGTGGTTGTGGTTGTGGTGGTGGCGGCCGGAGCCGGACCTGTCGATCTCCTGGA
ACGTCTCCTTGACGACGTGCTGCTGCTGCACGCCGCCGCGGCCGAGGAAGCCGCCGGTGGGGGTCACCGACCTCACCTCCTCCGAGCAGTAGTCCACCTC
CTGGTAGTGAGCCATTGTTTTTTAGTTGGGGAGTGAGGTGAGGTGGTGTTGTGATGAGCGAGAGATGGTTAATTAGGGTTTTGGTGGTGT