CANTATAdb - search

Detailed information on CNT30574836

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30115525	Oryza barthii	Oryza nivara	67.45	100	99.04	628	forward

Expression of CNT30574836

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MPSKSSFDFILFRPLQRRERDLVYGSSGARSKRRRSRHRRRSDRCRPSQAEPSRQRLLLEALLKTPQ*

>peptide 2 (74 aa)
MAQQVRRSATVFFTSGCRRHCRFRLLRSSSRSSRRRSPAEGRRRREDARAVAVTKTPENFNLTRDDCLIGEEVI*

>peptide 3 (76 aa)
LGFPCLALFSASLSRHSSLSTPKPKKPRERAPTLPLHLSFVVGRRKGGRRRSPTSRLHPYLIHVLLSSLHAEQILF*

Sequence

>CNT30574836
CCTCGGTTTCCCTTGTCTCGCTCTCTTCTCCGCCAGTCTGAGTCGCCATTCTTCACTGTCCACCCCTAAGCCGAAGAAACCCAGGGAGAGAGCTCCAACT
CTCCCTCTCCACCTCTCTTTCGTCGTCGGCCGCCGAAAAGGGGGACGCCGCCGATCGCCAACGAGTCGTCTCCATCCCTATCTGATTCACGTTCTATTAT
CTTCTCTCCATGCCGAGCAAATCCTCTTTTGACTTCATCTTGTTTCGTCCACTGCAGCGACGGGAACGCGACCTCGTCTACGGGAGCTCTGGAGCGCGCT
CCAAGCGCCGCCGCAGCCGACATCGTCGCCGTTCCGACCGCTGTAGACCGAGCCAAGCCGAGCCGTCACGCCAACGCCTTCTCCTTGAAGCCCTCCTCAA
AACCCCTCAATAATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCACCGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTC
CGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCGTCGCCGGGAGGATGCGCGAGCCGTTGCTGTCACCAAGACCCCGGAAAACT
TCAACCTAACCCGCGATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGCTGACTTTTTCCAGTTACAAGGCAAGTCCCACCTCCCTCTCTTTGATCAC
TTTAAACCTATGTTTTGGAGGTTATTGAAAATGTTTGCAAATCTTGCATGCCGATTATACGCTAATAAATTAAAATTTTGTTAAACTTGTTAGACAAACT
CCTATTATTTGCATTATCACCTTAACCCCACATATATCCTTATCCATCATTCCTAACCTTAGGAACAATATGACTATACCATTTCATATATGAGTTTTGG
AGTCACTAGGTTACTATAATGCTTAGCCATG