Detailed information on CNT30574818


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690402Oryza barthiiOryza sativa65.677.4199.58473forward
CNT30674803Oryza barthiiSetaria viridis16.2322.7286.32117forward
CNT30552477Oryza barthiiOryza glaberrima60.1989.6799.54434forward
CNT3066768Oryza barthiiLeersia perrieri17.4838.1890.48126forward
CNT30369416Oryza barthiiOryza glumipatula55.8910098.76403forward
CNT30107444Oryza barthiiOryza longistaminata92.0964.9797.44664forward
CNT3099509Oryza barthiiOryza rufipogon99.1799.7298.74715forward

Expression of CNT30574818

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MDITNNLYKIISQLNIPLVGSRFLLGRFGHGRISADGSMDLLVQ*

>peptide 2 (41 aa)
MVGSARMAAWTFLYSDSMPSASIPFLRYSLKWAWNFSGSSSA

Sequence

>CNT30574818
CTCATCTAGTGTGTAAAGCGCCCAAGGGAACTCCAGTTTAGGACAATGCAGGCAAGAAGACCTGAAGATTGACTGCCCGTTGCTAAAAAGGAAAAAGTAA
CATAAAACACTGACAAGTGAAGAGCCAGGCAGAACAAATTTTGATCAATATCCAAACGGCAGCTTCTCACATAAATAAGATAACCGATAGCTCCAGGTTG
AGAATCAAAAACCGAAAGAAATAGGTTCTTTGAGCAGAGTGCAGAACATAAACAAAAATGCCTGTTGCAAATTGCAAGACTACAGGTAAACTTAAATGCC
ATATGGAGTTTGTTTGGCAGCATAAGATGAAACTACTGTGATAAGGCTACTCTCTCACTCGTCATCCTCTTCCTCGTCATCATCATCAGCACCAGCTGAG
GAGTTGAGAGCATTCAATCTTTCGACGAGACTGGCCTTCCTCTGCTCGTAGGTCAGCTTCTTGAGGTTGTATCTGCAGCAACGAGGCAAGTTAGTTACAT
CATACATGGACATCACAAATAATCTTTACAAAATCATCAGCCAGCTTAATATACCTCTTGTGGGTAGCCGGTTCCTTCTTGGTCGATTTGGCCATGGTAG
GATCAGCGCGGATGGCAGCATGGACCTTCTTGTACAGTGATTCCATGCCATCAGCGTCAATTCCCTTCTTGAGGTACTCACTAAAGTGGGCTTGGAATTT
CTCAGGTTCCTCCTCAGCCAT