Detailed information on CNT30574816


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000877, E-value = 3e-177

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555143Oryza barthiiOryza glaberrima17.1280.4491.1292forward
CNT30596034Oryza barthiiOryza meridionalis26.8580.4990.39458forward
CNT30369193Oryza barthiiOryza glumipatula63.36100.5698.061081forward
CNT30108101Oryza barthiiOryza longistaminata23.7485.8193.33405forward
CNT3099794Oryza barthiiOryza rufipogon60.9100.198.271039forward

Expression of CNT30574816

Peptides detected in this lncRNA

>peptide 1 (90 aa)
DIERADAWPQRVVDLGFPCLALFSASLSRHSSLSTPKPKKPRERAPTLPLHLSFVVGRRKGGRRRSPTSRLHPYLIHVLLSSLHAEQILF*

>peptide 2 (75 aa)
MAQQVRRSATVFFTSGCRRHCRFRLLRSSSSRSSRRRSPAEGRRRREDARAVAVTKTPENFNLTRDDCLIGEEVI*

>peptide 3 (67 aa)
MPSKSSFDFILFRPLQRRERDLVYGSSGARSKRRRSRHRRRSDRCRPSQAEPSRQRLLLEALLKTPQ*

>peptide 4 (54 aa)
MKYCTSFFLRVRTSFRLVVGIYSLYKFTKRIPGRSISMPAILLHLGRFSHHKLLI

>peptide 5 (30 aa)
MEGPESLRHPFHLVFTRLRWLVTPYHYKTF*

>peptide 6 (29 aa)
MATTCRRPRFPLSRSLLRQSESPFFTVHP*

Sequence

>CNT30574816
GAGATATTGAGCGAGCCGATGCATGGCCACAACGTGTCGTCGACCTCGGTTTCCCTTGTCTCGCTCTCTTCTCCGCCAGTCTGAGTCGCCATTCTTCACT
GTCCACCCCTAAGCCGAAGAAACCCAGGGAGAGAGCTCCAACTCTCCCTCTCCACCTCTCTTTCGTCGTCGGCCGCCGAAAAGGGGGACGCCGCCGATCG
CCAACGAGTCGTCTCCATCCCTATCTGATTCACGTTCTATTATCTTCTCTCCATGCCGAGCAAATCCTCTTTTGACTTCATCTTGTTTCGTCCACTGCAG
CGACGGGAACGCGACCTCGTCTACGGGAGCTCTGGAGCGCGCTCCAAGCGCCGCCGCAGCCGACATCGTCGCCGTTCCGACCGCTGTAGACCGAGCCAAG
CCGAGCCGTCACGCCAACGCCTTCTCCTTGAAGCCCTCCTCAAAACCCCTCAATAATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCACCGTCTT
CTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGCAGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCGTCGC
CGGGAGGATGCGCGAGCCGTTGCTGTCACCAAGACCCCGGAAAACTTCAACCTAACCCGCGATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGCTGA
CTTTTTCCAGTTACAAGGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGATTCTTCTAGGACTTGAACTTAATGGGGTAAACCCCTAGTCGG
TGTGCTTGTGGATTGGGTAGACAAGCTTCCGTTGTTCTCTCATATATCTATTTGGCCGGTCGGCATATGTAATTATTAAGTTGTTGTAAGTCTTAAGTTT
CTTTCATCTTAGTTGTGTTTGCTATGTATAATCATGCTTAAGATGAAAGTGTGGATCTAGTGCACATCCTAGAAACTAGATTCACATGAGTATGAGTTAG
GAATATTTGAGAGGTTGTAGATCTTTAGCCATTTTGTTAAGTCTAAATCTCCTGAATGTGTAACACATCTGGTCGCCACCTTCGAGTGGTTTGACGGGCA
CATCTCAGGCTGAAGTTGACTGGCAAGCTAAAGGTCCAGCAATGTCTCTAATATTCCTGTCTCGAGACGTCGGATGTTTCATTGTGATTGTTTGATGACT
TGAATTATTCACATCATCCCTCAATTATAATGGAAGGTCCGGAGAGCCTACGACACCCATTCCATTTAGTTTTTACTAGATTGAGGTGGTTGGTTACTCC
ATATCACTACAAGACGTTTTGATGTCTTGCTCGTGATTATTTTCTTGCAAAAAAAAAGTTGCCAACAGATACAAACAAAAACCTAACCACTATCTAGTTT
GTGAAGTAGTACTAATCACTAGATACACATAACCATGGAGGATTGAGTTTCAATAGCCAAGTAATAATCCATTTTGTTCGTATTCATTTTCAAGTGAGTC
GGGAGTTCTAAAACTTGTTTATTGAATCGACCAGTAATCATGAAGTACTGTACATCCTTTTTTTTAAGGGTACGTACATCTTTTCGTTTAGTAGTTGGCA
TATATAGTTTGTATAAATTTACAAAAAGAATTCCAGGTCGATCAATATCAATGCCTGCAATTTTACTTCACCTAGGAAGATTTTCACACCACAAGTTATT
GATCCC