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Detailed information on CNT30574814


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005371, E-value = 6e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108512Oryza barthiiOryza longistaminata19.2387.3596.47283forward
CNT30100680Oryza barthiiOryza rufipogon19.2970.1295.07284forward

Expression of CNT30574814

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPAGRCRSAAAVLTRDARRWPPPSAVPPEV*

>peptide 2 (80 aa)
MFGRRPSPCCEASPSPNSPVSFHRSLRPPSAALCPRDAVGVPPLSSPEMPAAGRLHPPCRPKCSASELKTKLEDQGSDPS*

Sequence

>CNT30574814
CAAGTAAAGAAACCAGTTAAAACGAGCACAAGCTTCTCTGCTCCTCTTCTCTGATCCCCCTGCTTAGGAAATATTTAGCACCAACATCTTTTTCCCAAAC
CGTCGTCAAAACACCACTCCCGCTACAACACCCGAGCTGCCCCACCTCCACCGTCTCCAGCCGCCTCTTGCCACCGTTCCCGTCCACCTCACGCCGCACC
TCCACCTCCACCGCGTTCGCCGCTCCATGCCGCTCCCCGGCAACCGCTCCGCCGGTCCCAATCGTCGCTGGACTTGTCTCCCCGCACCTCCCTGAATCCC
ACAGCCAATTCCACATGTTCGGCCGGCGTCCCTCGCCATGCTGTGAGGCCTCTCCCTCCCCTAACTCCCCCGTCTCCTTTCACAGGTCCCTCCGGCCACC
GTCCGCCGCTCTATGCCCGCGGGACGCTGTCGGAGTGCCGCCGCTGTCCTCACCCGAGATGCCCGCCGCTGGCCGCCTCCATCCGCCGTGCCGCCCGAAG
TGTAGTGCTTCTGAGCTGAAGACGAAGTTAGAGGACCAAGGCTCAGACCCCAGTTGAGTTTTTGCCTGTGGAGTGGAGCTGAAGCCCCGCTAGGATCGCC
TTTTTCCGCTGCTGTCGTTCTCTTTCGGTGTGAGGACTAAGTGCCTCTTCTGTAAGTATTTTATGCTTTATTTACGTTTGGAACCGTTTATTACTTGTCG
TTTTGTGTACCTTGGCTGGTGCTGGACAGGGATTTAATACACAAAATAGTCTGAAAATTTGGGCTAAATTTCTAGGCGTGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGACAGACAGATAGAGAGGGGCGAAATGAAACAATCGACAATTGATTTCAAGAGACAAGGGAGAAATTTAGAAATTAGAGGTCAAA
CATTGAATTGAGTTGGAATTTTGAGGATTTGACGATAATTGCGGATAGGGCTTTACAAGAGAAATCTGAATACAGATATTTGAACTCTCAGATTATTTGG
ATCGAGAATTTTGAGGATGCGATTTTTGGCATCACGAAGATGGACCAAATGAGGGATTTTAATTGAGATCTATGGCAATATTTTATTAAATTTTTAACGC
CACGTGAAAATTAGGGCGTTATATATGTGTTATTATCCAATTGGTAAGCTGTTTTACAGGGAACCACTTTAAGAACAGAAGTTGGAATGAGAAGATCGAC
TTGAGCTCGTTTGTACTTATTGATGGTAAGATACATGCTGTCAAAGCACAATTTGCTGGCTTACTCGACACGATGAGGGACAAGTTGACTGTTTACAGCT
AGCATCCTATATAAAAAGAAGTTCTTCTGCTTTGAGGGCAGTTACCCACTTTATCTGTTGCATCTTATCAAGTTGTTGGAACAACTGAAAAGTGGCCCTC
TAACTTTGTCACACAAAGCTATTTTAGAGTGTCATCCTTCTTTCTTCAACGCTTTTAGAGTGTCATCCTTCT