CANTATAdb - search

Detailed information on CNT30574808

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000279, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552380	Oryza barthii	Oryza glaberrima	93.5	85.64	99.92	1294	forward
CNT30595455	Oryza barthii	Oryza meridionalis	15.61	23.95	94.44	216	forward
CNT30110178	Oryza barthii	Oryza longistaminata	66.33	48.47	99.13	918	reverse complement
CNT30100012	Oryza barthii	Oryza rufipogon	93.5	51.09	99.46	1294	forward
CNT30117877	Oryza barthii	Oryza nivara	93.5	88.33	99.38	1294	forward

Expression of CNT30574808

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MISISTMHMHNICDAYCIKFLENMYVCRPVV

>peptide 2 (35 aa)
VKAQQKSPPRPPSSSSLFFSFSPSLPHVLSSAAAS*

>peptide 3 (41 aa)
MWFSSSFRNPSLLFYCCSSGSKVILLELSFSTLSLVDCSPS*

>peptide 4 (71 aa)
SKPNRKAHLDHLLPLLSFSRSPLLSLTFSPAPPLPRQRRRPPLRRLPHPTPATPLAVAGLNQLLGSSLLCP*

Sequence

>CNT30574808
GTCAAAGCCCAACAGAAAAGCCCACCTAGACCACCTTCTTCCTCTTCTCTCTTTTTCTCGTTCTCCCCTTCTCTCCCTCACGTTCTCTCCAGCGCCGCCG
CTTCCTAGGCAGCGCCGGCGACCTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCT
CACTTCTCTGCCCCTAAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCC
AGACCCCTACCGCTGGATCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATCCTACCGTGATTGAAAAATATGTGGTTCAGCTCCTCCTT
CAGAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGGTTGATTGTTCCCCC
TCTTGAACTGAACCCCCTGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGACAGGATCTGCT
ACTGGTGATTCTCTTCCTCCTCTTGAGACTAATCCTCTTTCTTGATTTTCGCTCTATCTTGCTTCTTGACCTGAGTTTCATCTCCTCCCATAGTTGGAGT
TCATCCAAGAACTGAACACCTCTACTTTTCCTTCAGATTTGGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATTGG
TTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTGCTAAGCTTGGTTCTATGATTCTAACTACTACTGCCGC
AGCTGCTGCTATTGCTCTACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGCTTGGTTGATATATATGT
GAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAACGTGGGATT
TCACTAAATTTTTCTAGTTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCAGGGTCTCTAAAATTGAAGGTTACTCTGAGATTAGG
GACTGATTTGTAATTGTTCTAGAACTCAAGAGTTTTTCTGAAAACTAAATAATTATTGAATCTTTGACTGAGATGGTTCAGTTTATGATATGATATCCAT
AAGCACCATGCATATGCACAATATATGTGATGCATACTGTATAAAATTTCTAGAGAACATGTATGTATGCAGACCTGTAGTGGT