Detailed information on CNT30574804


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30457183Oryza barthiiSaccharum spontaneum24.0614.391.8122forward
CNT30682213Oryza barthiiTriticum urartu23.4710.6884.87119forward
CNT3099658Oryza barthiiOryza rufipogon42.841.199.08217forward
CNT30115632Oryza barthiiOryza nivara44.5829.7499.56226forward

Expression of CNT30574804

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSYMWTEEKAEKSAGREMRSREPRLWNWKREGSS

>peptide 2 (37 aa)
MKDEDEDGDEERMIACMHASLYIGQFRRRRRGRSRGS*

Sequence

>CNT30574804
CAGAGCAGGTAGTACATATATCTAGCTACACAAATATATAGTACATAATTATTAAAGACCTCTATATATATGCATCAGCCACACTCACTCATGTACATGA
TACACATACAAGTAAGCAATTGATATAACACACCGCTGATAATTAATACCCACCCACAAGGTAATAAACCAAATCGATCAGCGACGACACATATGTATAC
CACTACTCATCACTCTCCATGAACTCTCACACAGTCACACACACAGTCATAAGAAGTATAATAAATTCACACACACCACAACAAAGATGAAAGACGAAGA
CGAAGACGGAGACGAAGAGAGAATGATAGCCTGCATGCATGCAAGCCTATACATAGGTCAATTTAGGCGTCGACGACGCGGAAGGAGTCGCGGTTCTTGA
CGACGATGTCGTACATGTGGACGGAGGAGAAGGCGGAGAAGTCTGCGGGGAGGGAGATGAGGTCGAGGGAGCCGCGCTTGTGGAACTGGAAGAGGGAGGG
GTCCTCG