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Detailed information on CNT30574797


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30457622Oryza barthiiSaccharum spontaneum10.5820.2981.25128forward
CNT30341910Oryza barthiiEragrostis tef11.3231.4281.75137forward
CNT30107539Oryza barthiiOryza longistaminata72.5637.5497.84878forward
CNT30550410Oryza barthiiOryza brachyantha12.7339.0994.16154forward

Expression of CNT30574797

Peptides detected in this lncRNA

>peptide 1 (97 aa)
NTHEHRRVEQPVSLRPEEAVQSTAAGEAKMDKSVLMMLMAAAAVILLWLPLVLPPLPPPPPFLLFIPVVMMLLLFSLVLVPSRNCTGIPQLQSVTSE*

>peptide 2 (36 aa)
MLMNLDRYMNIENTRMTYIVKRREYMATTNNEKKES*

>peptide 3 (52 aa)
MTQIRRTFSIILNLRTQLATSDMNRRHPTISIMLCIIFNIRIQLCQSAMASY*

>peptide 4 (30 aa)
MVDQQADGRFLRRTSVLPQAYMNHASSLYI*

Sequence

>CNT30574797
AACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCCGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCG
TCCTGATGATGTTGATGGCGGCGGCGGCGGTGATCCTCCTGTGGCTCCCATTGGTGTTGCCGCCGCTACCGCCGCCGCCGCCATTCTTGCTCTTCATCCC
CGTCGTGATGATGCTCCTTCTCTTCTCCCTGGTTCTTGTCCCGTCTAGAAACTGTACTGGCATCCCCCAACTGCAGTCAGTAACATCAGAATAAGAACGC
CTGATGGTCGATCAGCAGGCAGATGGCCGGTTCCTCAGGAGAACTTCTGTTCTACCTCAAGCCTATATGAACCATGCCTCAAGCCTATATATATGAACCA
TGGTTGTGAAGACTGGGAAGAAAAAAAATGAACAAATGAATGTTAGCTAGGAATTCCTGCTGGTGAAGAATTTCCAGGATTTTTTTGTGCCTGTGGAAAG
CTGTAGAGTAGTAGGCCGGCGGTCAGCACCACGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCGATGTACGGCAACGGTAGGGTGAAGG
CGTAGATGGACAGTGGAACTGCATGCACCAAGAAATTTAGGCATCAGAAATGATTATAGTTCTCTCTGCAGGTCTGCAGTTTACATTTATTAATATTTAG
CATCTTCTTGTACGGAGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCACTCCTCACATTCATATTGATGCTAATGAATCTAGATAGATATATGAA
TATAGAGAATACTAGAATGACTTACATTGTGAAACGGAGGGAGTACATGGCAACGACAAACAACGAGAAAAAGGAAAGCTAACTGTGCTCTTCCTCATCC
TATAACTTGCCAAATTATGACTCAAATACGTCGAACTTTCAGCATTATATTGAACCTTAGGACTCAGTTGGCTACTAGTGACATGAACAGGAGACACCCA
ACAATATCAATAATGCTATGCATTATCTTCAACATCAGGATTCAGCTGTGCCAGTCTGCTATGGCTAGCTACTAGTGGCATGAACAGCAGACAGTAGTAC
CCAACAGTGATAACAATGCTACACTAAGATGGTGTTAATAATTGGCTGTAACTCTGTTGAGTCAAGGCTGGGATATAAATTCCACTATCTAAAAAAACAC
TAAGGTGGTG