Detailed information on CNT30574790


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690113Oryza barthiiOryza sativa62.78100100280forward
CNT30682377Oryza barthiiTriticum urartu38.1244.7482.94170forward
CNT30348607Oryza barthiiEragrostis tef35.4336.4184.18158forward
CNT3099611Oryza barthiiOryza rufipogon77.5886.07100346forward

Expression of CNT30574790

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MQARQLGHRSAARRGMATMARRRLRHLVELDELADLSSSEMRVANGCN

>peptide 2 (43 aa)
ATWVPRKHELIPTDASKIQQKIEKKKGNPTHKGSKAEHGTSCD*

>peptide 3 (42 aa)
MELLTLLCRRGSSGTGALPAEVWPPWLDDVSDISSNLMNWLT*

>peptide 4 (68 aa)
MQAKFSKKSKRKKATQPIRAAKQSMEQAAIKMDRFRSAASSLITSTPQLVLKQTRHKQDYQNIHKFRP*

Sequence

>CNT30574790
CGGCTACATGGGTTCCAAGAAAACATGAGCTGATTCCAACGGATGCAAGCAAAATTCAGCAAAAAATCGAAAAGAAAAAAGGCAACCCAACCCATAAGGG
CAGCAAAGCAGAGCATGGAACAAGCTGCGATTAAGATGGACAGGTTCAGAAGTGCGGCATCCAGCCTAATAACATCCACCCCCCAGCTGGTACTTAAACA
AACACGACATAAACAAGACTACCAAAACATCCACAAGTTCAGGCCATAACATAGCAGCCAAGCGGCTGCTCAGCAGAAGAACATGGAGCTCCTGACTTTG
TTATGCAGGCGAGGCAGCTCGGGCACCGGAGCGCTGCCCGCCGAGGTATGGCCACCATGGCTCGACGACGTCTCCGACATCTCGTCGAACTTGATGAACT
GGCTGACCTGAGCAGCAGCGAGATGCGCGTAGCAAATGGGTGCAAC