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Detailed information on CNT30574788


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697634Oryza barthiiOryza sativa23.3129.0998.86176forward
CNT30369438Oryza barthiiOryza glumipatula35.2390.1789.1266forward
CNT30117174Oryza barthiiOryza nivara33.6493.3889.37254forward

Expression of CNT30574788

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MRVVREHKLPPTSPIPGHWSPSAPSLSLSLLLHGKKERRRKMTGGRRRKKRKRKRKTDSRVYYIWMATCGISRIG*

Sequence

>CNT30574788
TCTCTCTCCTGTCAAGTCCGGCCGACGCCGCCATCGGTCGATCTCCTCCTCTATAGTTCCCCTAGCTAAATCCTTGCACCACTGACTCCCCCTCCCTCCG
GCGAACCCATTTTTTCCCGTTTTCCCCTTCTCCCCCACCCCATAGCAACCACCACAACCACCTCCTTTGCAGCCGAAGAGAAGCTCTTCTACTTGCCGTT
CCGGCCAACTCCTCATATCCCTCTGCCGGAAACCATCCTCCCCAGATGCGCGTCGTCCGGGAACACAAGTTGCCGCCGACGTCGCCGATCCCCGGCCACT
GGAGCCCCAGCGCCCCTTCTCTCTCTCTCTCTCTGTTGTTACACGGGAAGAAGGAGAGAAGGAGGAAGATGACGGGAGGAAGAAGAAGAAAGAAGAGAAA
AAGAAAAAGAAAGACTGACAGTAGAGTCTATTATATTTGGATGGCAACCTGTGGTATTTCGAGGATCGGATAATCAGGTTGTCTATCTCGGATTTATTTG
CGTTGGAGCAAGAGTCTATTTGGAGTTTTTGCCGAAGCTGGGAGTTCAATCACATAAGTTAGTTTCATTCTAACTTAATTCGCAAATATAGATTAGACAG
ATGGTTTAAGTCTATAGCCAAACATTAGAGTTAAGTCATTCTATAGCTTTTGCTGTAATAGTTAGCCACAACCTTGTAAATACCCTATTATTTTACATAA
AGAAATCTCCTTTGGAGCCTTGATCAGATGTATGCGAAGAAGATCCAGATTGTTG