CANTATAdb - search

Detailed information on CNT30574779

BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 1e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30395272	Oryza barthii	Triticum turgidum	71.59	61.06	90.47	577	forward
CNT30250555	Oryza barthii	Avena sativa	72.7	57.96	85.32	586	forward
CNT30666199	Oryza barthii	Triticum dicoccoides	73.08	61.74	88.46	589	forward
CNT3011673	Oryza barthii	Zea mays	62.9	65.08	92.11	507	forward
CNT30684671	Oryza barthii	Triticum urartu	70.1	58.25	90.09	565	forward
CNT30369221	Oryza barthii	Oryza glumipatula	47.39	57.01	99.21	382	forward

Expression of CNT30574779

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTWQPQIARMLCAWIRLGLPR*

>peptide 2 (42 aa)
IFGYAERGERRASHRSLHESNGPHRRCSPEIHTHLPGTKLVA*

>peptide 3 (49 aa)
KYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

Sequence

>CNT30574779
AAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACAC
TCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCG
AACGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACC
CCTCGACGGCGCCCATGAGCACGACCTGGCAACCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCCCCCTC
GCTGAAGATCTGGGACCCCGCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGC
ATNGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCC
CCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAACACCTTGGCATTGGCGACCGCCTTGCCGGCGAGGGC
GGCAGGGGAGGAGAGTGCCATGGTGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAGATGGCCACAGATGCTTTTGGAATGTGTGTCTTTTGAGC
TCGTGA