CANTATAdb - search

Detailed information on CNT30574763

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006839, E-value = 2e-176

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30555247	Oryza barthii	Oryza glaberrima	21.75	34.88	85.2	196	forward
CNT30109627	Oryza barthii	Oryza longistaminata	34.18	98.72	96.75	308	forward
CNT3099541	Oryza barthii	Oryza rufipogon	67.59	91.99	97.54	609	forward
CNT30115706	Oryza barthii	Oryza nivara	32.96	99.66	97.64	297	forward
CNT30551809	Oryza barthii	Oryza brachyantha	44.95	43.04	82.72	405	forward

Expression of CNT30574763

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MHGFVREIGKKIGGACCWLQQQNNNHVFPPLDSENSEYVEQDSEVECVSTQQQGEDSGYXLCFLCGHCSXEGGEGNE*

>peptide 2 (65 aa)
MFFLHLIRRIRSTWSKTLRLSVFPHSSKERIPVXSYASCVVIALXRVARAMSDLLQLGSCPVGLP*

>peptide 3 (35 aa)
MCHVPRCTLTLLWYLLCLLIACDESVRLVAFLGTS*

>peptide 4 (33 aa)
GKFLKTHYFQCVRKVLTFLYLSHDLARLGPTFH*

Sequence

>CNT30574763
AGGAAAATTCCTGAAAACTCACTATTTTCAATGTGTACGTAAGGTTCTAACCTTCCTTTATCTGTCCCATGACCTAGCTCGACTTGGCCCCACCTTTCAC
TGACCTAGGCTCTCCACCAAGCCCCATCCCACCTCCAGGTCGTCCACCCACCTCAGGTCCATAAGACTAGCAGGAAACCCTTTCATCTTCTTCCTCTTTT
CTTTCTCCCTTGCTTGTTCTTTTCTTTCTTGCAAGCTGAGCTCCCAGCTCACTTCTTCCCATCAAATCTCCTCCAAACACTTGAGATCCATCCTTGCATG
TCACACCACAGCAATATCAAGTATCCAAGCCTCCCATCCATCCAAATATCTTGCACATGCATGGGTTCGTGAGAGAGATCGGGAAGAAAATAGGTGGAGC
TTGCTGCTGGTTGCAGCAACAAAACAACAACCATGTTTTTCCTCCACTTGATTCGGAGAATTCGGAGTACGTGGAGCAAGACTCTGAGGTTGAGTGTGTT
TCCACACAGCAGCAAGGAGAGGATTCCGGTTATNAGTTATGCTTCTTGTGTGGTCATTGCTCTGCNGAGGGTGGCGAGGGCAATGAGTGATCTCTTGCAG
CTTGGCTCTTGCCCGGTTGGTTTGCCCTAGTGGGGTTGTGGCACCACCGGTTTTATCTTTTGCCTATGAACTCTAATTGAGACTTCCGCTGCTATATTTA
TGTGTTGTATGTTGGGATCTCGGACCCTATTATGTGTCATGTACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATTAATTGCTTGCGAT
GAAAGTGTGAGGCTAGTGGCATTCCTAGGGACTAGCTAAACATGAGTAACGGGTTTTGATCGCTTGAGATAATCGGGAATAGCGCCTTGGATCGAGTCAC
T