Detailed information on CNT30574750


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000626, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595602Oryza barthiiOryza meridionalis62.3848.3498.63655forward

Expression of CNT30574750

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MEKEDLPKLFSCPTWPSTCLVDTFAASAVEASSSTPPAKLRSSENTAWVACRAAVSGHCWG*

>peptide 2 (73 aa)
MNSFQQRLAGRFRDPTTPHWSSLRKRGGVELLDFLGTRSRYNVVMLTPGIKTKWSICFMLQSCGMLIDLWIYG*

>peptide 3 (56 aa)
MDLWITILGQHLADASRLCRRRELRGYRHSITIFLSRWRRKTCQSCLVALHGLAPA*

>peptide 4 (57 aa)
MGCMQGSGVRPLLGVERNPEEGSSMEDAVLGFIYREYMKFLSQSGSLGGGVPFRRPK*

>peptide 5 (34 aa)
ARVLGSGESSKPYGVVSARAAVPDAAQVARRASR*

>peptide 6 (44 aa)
MHCCRLYMKPNEIQEPYVDCRTNYFPSKEGEILVELYCLWCPAV*

>peptide 7 (33 aa)
MLPDCAEEESSGDIDTPLPSSCRDGEGRPAKVV*

Sequence

>CNT30574750
GCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTC
GTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAA
AGCGTGGAGGCGTCGAGCTACTAGATTTTCTGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTCTATATGTTT
TATGCTTCAGAGCTGTGGCATGCTCATTGACTTATGGATCTATGGATAACTATTTTAGGTCAGCACCTAGCTGATGCTTCCAGACTGTGCCGAAGAAGAG
AGCTCCGGGGATATAGACACTCCATTACCATCTTCTTGTCGAGATGGAGAAGGAAGACCTGCCAAAGTTGTTTAGTTGCCCTACATGGCCTAGCACCTGC
CTAGTGGATACCTTCGCTGCATCGGCCGTTGAGGCATCGTCTTCAACACCACCGGCGAAGCTGAGAAGTAGTGAGAACACTGCATGGGTTGCATGCAGGG
CAGCGGTGTCAGGCCATTGTTGGGGGTAGAGAGGAATCCAGAAGAAGGGTCCTCCATGGAAGATGCTGTGCTTGGTTTCATTTATAGAGAGTACATGAAG
TTTCTTTCACAAAGTGGAAGCTTAGGTGGTGGAGTGCCTTTTCGCAGACCGAAATGAGATGTATTGGAGTACCTTGACGAAGCATGGGCTGGAAAGTTGG
TTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGGTGCAGTTTGGCTGGTCTTGCATTCTGCCTGTCAGATTAGTGCTGTAC
TTGATGCATTGTTGTCGTTTATACATGAAACCAAATGAAATACAAGAACCATATGTAGATTGCAGAACAAATTATTTTCCTTCTAAAGAGGGTGAGATCT
TAGTAGAACTTTATTGCTTGTGGTGCCCTGCTGTTTGACAATGTAATTGG