Detailed information on CNT30574744


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30293409Oryza barthiiTriticum aestivum22.2232.5692.86112forward
CNT30661152Oryza barthiiTriticum dicoccoides48.0235.1786.36242forward
CNT3099630Oryza barthiiOryza rufipogon51.1956.4699.22258forward

Expression of CNT30574744

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RRRQAGRRRARGRGRRWPGGWGRRASRRPPAPR*

>peptide 2 (73 aa)
GEGKPADAAREGAVVGGPAAGVGERLVGLLHLDEAAGVLGGDVGRRDVRMVLARHPPVGRADLVEGALRRDPE*

>peptide 3 (36 aa)
MALLFSLCFHFRFASTGARALLLPLSLSLSPLFFGFL

>peptide 4 (38 aa)
MGHGSSLLSMLSLSLRFHRCPCFASSSLSLSLSPFFWVL

Sequence

>CNT30574744
GAGGAGAAGGCAAGCCGGCAGACGCCGCGCGCGAGGGCGCGGTCGTAGGTGGCCCGGCGGCTGGGGTCGGAGAGCGTCTCGTAGGCCTCCTGCACCTCGA
TGAAGCGGCGGGTGTTCTCGGCGGCGACGTCGGGCGGCGAGACGTCCGGATGGTACTTGCGCGCCATCCGCCTGTAGGCCGCGCGGACCTCGTCGAGGGT
GCCCTCCGACGAGATCCCGAGTAGGTCGTACAACGTGGGCTGCTCCGCCGTGCGCAGGGTGCCCAAGTCCGGGCGAAGGCCACGCGCCGTCTGCAGCGGC
GGGCGGGGGACGCGGCCAGGGCGCAGGAAGGCAACGCGGGCGGAGGCAGGGGCGGCGGCGGCGGCGGAGGTGGGGGAGGCGGCGAGATGGGGCATGGCTC
TTCTCTTCTCTCTATGCTTTCACTTTCGCTTCGCTTCCACCGGTGCCCGTGCTTTGCTTCTTCCTCTCTCTCTCTCTCTCTCTCCCCTTTTTTTTGGGTT
CTTG