Detailed information on CNT30574736


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690231Oryza barthiiOryza sativa10095.8899.551116forward
CNT30115666Oryza barthiiOryza nivara10.9322.3483.61122forward

Expression of CNT30574736

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSSCYVTFSSSACFLAIEQEIVGCNTLLVSNGSKKFRTL*

>peptide 2 (30 aa)
MVQRNSGHCNLGNLVDLTVHYHSYKCFGVLG

>peptide 3 (56 aa)
ALTVSPTPAVAEPHLPLSSSSPVPMVHVAGFHHHHHPSRGISGVRWRFGWDEEGGY*

>peptide 4 (51 aa)
RAHRVSHTGRSRAASSSILLLPGPHGPRRRLPPPPPPISRDLRGEVEVWMG*

>peptide 5 (42 aa)
MTNRSNSRIRRTRHRCFSIARPAAGSITTAPVQARMPTMMQP*

>peptide 6 (38 aa)
MRREGTSGGNWERRPRKRVKVFDRSSRDARCCFSIGID*

>peptide 7 (38 aa)
MSQCYVLVCQLVLTFSMLFLVGFSEGNHKRSLSTSLFW*

Sequence

>CNT30574736
GCGCGCTCACCGTGTCTCCCACACCGGCCGTAGCCGAGCCGCATCTTCCTCTATCCTCCTCCTCCCCGGTCCCCATGGTCCACGTCGCCGGCTTCCACCA
CCACCACCACCCATCTCGCGGGATCTCAGGGGTGAGGTGGAGGTTTGGATGGGATGAGGAGGGAGGGTACTAGTGGTGGGAATTGGGAAAGACGACCCCG
CAAGCGAGTCAAGGTCTTCGATCGGTCTTCCCGCGATGCTCGCTGCTGCTTTTCGATAGGCATTGACTAAGATATGGGTCTTACTCACACGGTTAATACT
ACAATCCTTCTGTGAAATTTCCACCAAGATTCTGGTTCATAAATTTGACAAGGACTCCAGAGAACTTCAGAGGGGCATACAGAGCACCACAGAATAAATC
AAGGTGGGATAAATGACAAATCGTAGCAACAGCAGAATAAGGAGGACACGGCATCGCTGTTTTAGTATAGCTCGTCCGGCAGCAGGCTCTATCACCACAG
CTCCAGTACAAGCCAGGATGCCAACGATGATGCAACCTTAAATCTGACAATACCGCCCTCCTAAAAGGGAATTCAATGTTGATGGACTTAAGCAGCCTGA
AGTGTAACATGTGACATGACTCATGAGCCAATGTTACGTCCTCGTGTGCCAACTGGTATTAACATTTTCAATGTTATTTCTTGTTGGTTTCTCAGAAGGT
AACCACAAAAGATCGCTATCGACTAGCTTGTTTTGGTGAGTGTAGTCAAGTCAAATTGAAAGATTAGCAGTGATTACACAAGATATTACATAACAAAAGG
GAGAATCGAACCAAGAGCGCCTGCACTTTGCAAGCTCAATCTTGATAGCAATCCTAGCAACTTGAACTTCTTGGAATATGTTGTAACTTGTAAGGATGCT
GAACTAATTAGGTTATATTAGTGGGATAGTATGTCTTCTTGTTATGTCACTTTTTCTTCTTCTGCATGTTTCTTAGCAATAGAACAGGAAATTGTTGGAT
GCAATACTTTGCTGGTGAGTAATGGTTCAAAGAAATTCAGGACATTGTAATCTAGGTAATCTTGTAGATTTAACAGTGCATTATCATAGTTATAAATGCT
TTGGCGTGTTGGGCAC