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Detailed information on CNT30574730


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596072Oryza barthiiOryza meridionalis58.221.0997.99298forward
CNT30100058Oryza barthiiOryza rufipogon63.2868.9497.53324forward

Expression of CNT30574730

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHSNHQPISDSGQSILSTSLFRFIVLGRVT*

>peptide 2 (32 aa)
MGASFTFKLGLKGWTYGDAIAWGALIRPSCLSS

>peptide 3 (39 aa)
MHALQYTKIAKENHSINSGIHPRNEKVYIENALQPPTNK*

Sequence

>CNT30574730
CGACTAGCTTGTAGTACTAGCTAGGAAATTCCCTAACCTCGATATGAACAACTTACTCAACTCAACAGAGTAGCAAATGCCCAAGAAAGCCCAAGTCAAT
CTATTTGGAAATCCAATCTATTTTCTCGTATTCGTGTGGGAAATCAAGCTATTCTAGTTGAAATTCACCAGAAGAAATGCACGCACTTCAATATACCAAA
ATTGCAAAGGAGAATCATTCGATTAACAGTGGAATTCATCCAAGAAATGAAAAGGTATATATAGAAAATGCACTCCAACCACCAACCAATAAGTGATTCC
GGGCAATCAATTCTATCCACGAGTCTGTTCAGATTCATTGTATTAGGACGCGTCACGTAATGGAGGGAGTATTATACAACACTATTGGTTTTTACTAGTG
TTAACTCTTATACATGGGGGCTAGTTTTACCTTTAAACTTGGTCTAAAAGGATGGACATATGGCGATGCAATTGCATGGGGGGCATTGATTCGACCATCA
TGTCTGTCCAGT