Detailed information on CNT30574722


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552241Oryza barthiiOryza glaberrima62.0457.23100384reverse complement
CNT30369317Oryza barthiiOryza glumipatula23.5922.8897.26146forward
CNT3099836Oryza barthiiOryza rufipogon42.9757.9593.23266forward
CNT30115578Oryza barthiiOryza nivara25.5328.8893.67158forward

Expression of CNT30574722

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPPPPPPPPISRTAMMRRRRRSGARGGGAACCAARSRGDE*

>peptide 2 (71 aa)
MDGWRRRRSDDGELSRITRGRSCGRGGRRGGRRRRRRRRSWRAGSGPSRGRAPTTPPSPPPTTTRPSPASSP

>peptide 3 (61 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAAAADQPHGDDASSSSFRCTRRRSGVLRGAVER*

>peptide 4 (70 aa)
MDGVVVGRTTASSRASRAGVAAGEVGGAEVGGVGAAGEVGGPVVARHGVGHPRHLPRRRRQRPVLRLRHPR

Sequence

>CNT30574722
TATATGCACTGTGATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCACATGAAATTGAAAGGAAACTAAAACTGATTTATTACTTGT
TCCATTAAAACCATCACACTAGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAACAGTAGTAAAGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCA
CGAAGAACAAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGCCGCCGCCGCCGATCAGCCGCACGGCG
ATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCTGCGCGGCGCGGTCGAGAGGTGATGAGTAGTTGACGCGAAGCAGATATA
TATGGATGGATGGCGTCGTCGTCGGTCGGACGACGGCGAGCTCTCGCGCATCACGCGCGGGCGTAGCTGCGGGCGAGGTGGGCGGCGCGGAGGTCGGCGG
CGTCGGCGCCGCCGGCGAAGTTGGAGGGCCGGTAGTGGCCCGTCACGGGGTCGGGCACCCACGACACCTCCCTCGCCGCCGCCGACAACGACCCGTCCTT
CGCCTGCGTCATCCCCGCC