Detailed information on CNT30574705


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000626, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109999Oryza barthiiOryza longistaminata68.5973.4797.09961forward
CNT3099527Oryza barthiiOryza rufipogon96.0788.0999.551346forward
CNT30115488Oryza barthiiOryza nivara75.6683.5399.721060forward

Expression of CNT30574705

Peptides detected in this lncRNA

>peptide 1 (45 aa)
ATNAHHLTIPSIHRGRRGLGCSGRGNPLNRTASCPRGPPYQMLLK*

>peptide 2 (57 aa)
MGCMQGSGVRPLLGVERNPEEGSSMEDAVLGFIYREYMKFLSQSGSLGGGVPFRRPK*

>peptide 3 (44 aa)
MHCCRLYMKPNEIQEPYVDCRTNYFPSKEGEILVELYCLWCPAV*

>peptide 4 (44 aa)
MLPDCAEEEQLIHDDEFYQESSGDIDTPLPSSCRDGEGRPAKVV*

>peptide 5 (73 aa)
MNSFQQRLAGRFRDPTTPHWSSLRKRGGVELLDFLGTRSRYNVVMLTPGIKTKWSICFMLQSCGMLIDLWIYG*

>peptide 6 (61 aa)
MEKEDLPKLFSCPTWPSTCLVDTFAASAVEASSSTPPAKLRSSENTAWVACRAAVSGHCWG*

>peptide 7 (61 aa)
MIWPGPCVCCYQTGLGQVGLMPALVFMPINRGRAQNKSFNRTLMFMFQCILTELWTCGYNL*

>peptide 8 (58 aa)
MRFMNNNLDDEYTLDVLEYLDEAWAGKLVLVVITRSRSCVMDLLSRCSLAGLAFCLSD*

Sequence

>CNT30574705
CGGCCACTAACGCGCATCATCTCACCATCCCCAGCATCCACAGGGGCCGTCGGGGGCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTC
GTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAG
AGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGGGAACAAGAAGTC
GATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTCTATATGTTTTATGCTTCAGAGCTGTGGCATGCTCATTGACTTATGGATCTATGG
ATAACTATTTTAGGTCAGCACCTAGCTGATGCTTCCAGACTGTGCCGAAGAAGAACAACTGATACATGATGATGAATTCTATCAAGAGAGCTCCGGGGAT
ATAGACACTCCATTACCATCTTCTTGTCGAGATGGAGAAGGAAGACCTGCCAAAGTTGTTTAGTTGCCCTACATGGCCTAGCACCTGCCTAGTGGATACC
TTCGCTGCATCGGCCGTTGAGGCATCGTCTTCAACACCACCGGCGAAGCTGAGAAGTAGTGAGAACACTGCATGGGTTGCATGCAGGGCAGCGGTGTCAG
GCCATTGTTGGGGGTAGAGAGGAATCCAGAAGAAGGGTCCTCCATGGAAGATGCTGTGCTTGGTTTCATTTATAGAGAGTACATGAAGTTTCTTTCACAA
AGTGGAAGCTTAGGTGGTGGAGTGCCTTTTCGCAGACCGAAATGAGGTTTATGAACAATAATTTAGATGATGAATACACTCTAGATGTATTGGAGTACCT
TGACGAAGCATGGGCTGGAAAGTTGGTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGGTGCAGTTTGGCTGGTCTTGCA
TTCTGCCTGTCAGATTAGTGCTGTACTTGATGCATTGTTGTCGTTTATACATGAAACCAAATGAAATACAAGAACCATATGTAGATTGCAGAACAAATTA
TTTTCCTTCTAAAGAGGGTGAGATCTTAGTAGAACTTTATTGCTTGTGGTGCCCTGCTGTTTGACAATGTAATTGGTGCGAGACACTGGCATATGATCTG
GCCTGGGCCTTGTGTATGTTGTTATCAGACTGGACTAGGCCAGGTGGGCCTTATGCCTGCTTTGGTCTTCATGCCAATAAACAGAGGGAGGGCCCAAAAT
AAGTCCTTTAACAGGACACTGATGTTCATGTTCCAATGTATACTTACGGAGTTGTGGACTTGTGGTTATAACTTATAAGTTGCAAGGGACAGATATTGCC
C