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Detailed information on CNT30574682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690391Oryza barthiiOryza sativa28.0754.3999.48192forward
CNT30671720Oryza barthiiSetaria viridis24.4237.1995.81167forward
CNT30522940Oryza barthiiSetaria italica24.7124.0195.86169forward
CNT30315505Oryza barthiiCorylus avellana24.7136.9886.98169forward
CNT30702570Oryza barthiiQuercus lobata17.6924.289.26121forward
CNT30379403Oryza barthiiManihot esculenta16.9620.6484.48116forward
CNT30526697Oryza barthiiPhaseolus vulgaris17.2544.8786.44118forward
CNT30632073Oryza barthiiVigna unguiculata24.7122.4784.02169forward
CNT30196132Oryza barthiiPisum sativum17.2524.8986.44118forward
CNT30163372Oryza barthiiPistacia vera16.9620.1482.76116forward
CNT30180643Oryza barthiiSecale cereale24.8520.5696.47170forward
CNT30303711Oryza barthiiTriticum aestivum24.7124.7897.04169forward
CNT30220711Oryza barthiiHordeum vulgare24.7116.3197.04169forward
CNT30565715Oryza barthiiActinidia chinensis24.7121.5386.98169forward
CNT30552407Oryza barthiiOryza glaberrima33.0432.56100226forward
CNT30435305Oryza barthiiAegilops tauschii24.7121.5396.45169forward
CNT30457159Oryza barthiiSaccharum spontaneum24.7120.2697.04169forward
CNT303693Oryza barthiiZea mays17.5434.7895.83120forward
CNT30606042Oryza barthiiGossypium raimondii17.2538.6983.9118forward
CNT30129800Oryza barthiiCorymbia citriodora24.7120.9987.57169forward
CNT30722188Oryza barthiiTriticum spelta24.8524.8997.06170forward
CNT30346527Oryza barthiiEragrostis tef23.174.8896.84158forward
CNT30363575Oryza barthiiSorghum bicolor24.7118.3397.04169forward
CNT30360466Oryza barthiiLactuca sativa16.8127.3283.48115forward
CNT30369169Oryza barthiiOryza glumipatula24.4229.1496.41167forward
CNT30570929Oryza barthiiVitis vinifera23.5423.9981.99161forward
CNT3052765Oryza barthiiAmborella trichopoda17.423.4387.39119forward
CNT3024639Oryza barthiiPopulus trichocarpa17.1128.481.2117forward
CNT30149313Oryza barthiiBrachypodium distachyon17.9835.2495.12123forward
CNT30496069Oryza barthiiDigitaria exilis24.7121.1894.67169forward
CNT30174435Oryza barthiiVigna angularis24.7125.2281.66169forward
CNT30557628Oryza barthiiPanicum hallii24.7130.3495.27169forward
CNT3065708Oryza barthiiSelaginella moellendorffii17.2534.0185.59118forward

Expression of CNT30574682

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMIDMALEEMPMSGWTCLSTLKM*

Sequence

>CNT30574682
TCAGCACAAGGCAACCAAAGACAACATAGGAGAGATCACATATTCACATGATACAAAAGCATTACTAGTGTATTCGAATCCATGAAACAGAAGTTCCTCA
AAAGCGGCCCCACCTAATTCTTCTTACAGTCACTAAATCCCCAACATCCATTTCCCATCATTGATGCACTACAGCTAGTAGATAAATAGATCAAACTAAT
ATTACTACTAGCACAATAGCACCAGGTGCAGCCTAAGAGGAAGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGATGGTGGGCTTCTTGTT
GTAGCGGGCGAGCTTGGCGGACTCTCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATAGACATGGCCTTGGAGGAGATGCCGATGTCG
GGGTGGACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAAGTCTCCACGCTCTTCTTCCCCTTCTTCCGCCCGGCCTTCTTCCCCTCGCCGCTGCCCT
TCTCGCCCTTGCCGGCGGGGAGACGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCGGCCTTCTCCGCCGCGGGCTCCTCCTCCGCGGGCTT
CTTCGCGGCCGGCTTCTTCTCCGCCTTGGGCGCCATGGATGCTGCTCTCTTCTTCTCGGGGAGGGGAAGCGGTGTGGATTTTGC