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Detailed information on CNT30574680


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Oryza barthiiSetaria italica27.0733.0789.92248forward
CNT30530404Oryza barthiiEucalyptus grandis37.6697.1884.93345forward
CNT30316147Oryza barthiiCorylus avellana39.8548.9982.74365forward
CNT30703138Oryza barthiiQuercus lobata26.7546.7682.45245forward
CNT30499549Oryza barthiiCoffea canephora18.1233.8881.93166forward
CNT3021362Oryza barthiiCitrullus lanatus19.8727.9679.12182forward
CNT30729539Oryza barthiiCorchorus capsularis24.2433.0478.83222forward
CNT3068683Oryza barthiiQuercus suber39.6373.7880.72363forward
CNT30524728Oryza barthiiPhaseolus vulgaris28.0647.5980.16257forward
CNT30506399Oryza barthiiNicotiana attenuata15.2842.380.71140forward
CNT30177095Oryza barthiiSecale cereale20.6313.6490.48189forward
CNT30289293Oryza barthiiTriticum aestivum16.2749.0186.58149forward
CNT30223417Oryza barthiiHordeum vulgare17.0368.7289.1156forward
CNT30590847Oryza barthiiMusa acuminata23.6947.4880.65217forward
CNT30539234Oryza barthiiBrassica napus28.1728.281.78258forward
CNT30145616Oryza barthiiMedicago truncatula17.5835.4680.75161forward
CNT30244810Oryza barthiiAvena sativa25.2228.5983.55231forward
CNT30261302Oryza barthiiBrassica rapa26.0946.2382.43239forward
CNT30454417Oryza barthiiSaccharum spontaneum41.1648.1590.98377forward
CNT30131528Oryza barthiiLolium perenne34.6168.7689.27317forward
CNT30231964Oryza barthiiAnanas comosus20.5215.4182.45188forward
CNT3066796Oryza barthiiLeersia perrieri25.2259.3886.15231forward
CNT30653881Oryza barthiiRosa chinensis40.2834.5580.49369forward
CNT30718631Oryza barthiiMalus domestica golden40.564.6380.59371forward
CNT30339698Oryza barthiiEragrostis tef41.5930.8590.29381forward
CNT30363710Oryza barthiiSorghum bicolor25.5539.8692.74234forward
CNT30595456Oryza barthiiOryza meridionalis25.5541.0587.18234forward
CNT30360575Oryza barthiiLactuca sativa27.0741.1379.84248forward
CNT30570592Oryza barthiiVitis vinifera26.274.381.67240forward
CNT3055709Oryza barthiiAmborella trichopoda16.1622.6381.76148forward
CNT30105598Oryza barthiiOryza longistaminata58.1977.3697.75533forward
CNT30319856Oryza barthiiAsparagus officinalis29.1595.3682.77267forward
CNT30102778Oryza barthiiOryza rufipogon6.2222.5387.7257forward
CNT30580197Oryza barthiiEchinochloa crusgalli40.9445.5190.93375forward
CNT30499107Oryza barthiiDigitaria exilis27.0763.4389.11248forward
CNT30115589Oryza barthiiOryza nivara95.261.1199.43872forward
CNT30594668Oryza barthiiEragrostis curvula18.7851.0484.88172forward
CNT30603529Oryza barthiiOryza punctata41.2749.4196.3378forward
CNT30174824Oryza barthiiVigna angularis35.263479.88323forward
CNT30550386Oryza barthiiOryza brachyantha30.0210095.64275forward
CNT30337932Oryza barthiiCynara cardunculus27.5130.7380.16252forward
CNT3064271Oryza barthiiSelaginella moellendorffii22.4937.4580.1206forward

Expression of CNT30574680

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MGALKIRTAQPQSPAFGIPASSPPLKKKKTNIYILNGSY*

>peptide 2 (62 aa)
MGSTTSWRITSNRGLARWCATLSLRPVKKLSTTITLSPRSTRRSTRWLKVVVVVVVAAEDEAS

Sequence

>CNT30574680
CTGACCCTCTCGGAGCTACTTCTACCAAGCAAAAGTGTAATCTTCTAAACAAAAGATTCAAAGCATGGGTGCCCTAAAAATTAGGACAGCCCAGCCACAA
TCCCCAGCATTTGGAATTCCAGCCAGTAGCCCTCCTTTAAAAAAAAAAAAAACAAACATCTATATTCTCAACGGTTCATATTAGCAGTGGCTCCATAGTA
CTATAGCCTTTTCAAATCACAGGGTAATCCAATAATAGCTTATTTTTCTGTCAGTATTTTGATTCTTAGAAAAAATTTCTAGAACAAATAAACATAATTT
TGTTGGTTTCTGTCCTACAGTAAAATTATAAGAAATTAATACGGAGTATTGACAGCATAGGTGTTCCCATACTCTTATCTGTTATCCAACAAACAACTTA
GTCCAAACATGAAAGGTAACTATTAAGTTAATTTGTCAGTTAAATGCTGAGACATTAAATAATATGGCAAACAAAATATTGGCAGAGAATTATTACCAAT
GGGGTTGACATTGCCCCAGTAAGTCTCCACCTGAGGGTGCTGGAGGGGATCTCCATATACCTCACTGGTGCTGGTGAGGAGAAATTTTGCCCCAATCCTC
TTGGCCAATCCAAGCATGTTCAGTGTCCCAACCACGTTGGATATGATGGTCTTGATGGGGTTGTACTTGTAGTGCACGGGGCTAGCGGGGCAGGCGAGGT
GGTAGATCTGGTCGACCTCGAGCAGGATGGGCTCGACGACGTCGTGGCGGATCACCTCGAATCGCGGGTTGGCGAGGTGGTGCGCCACGTTGTCCTTGCG
CCCCGTGAAGAAGTTGTCGACGACGATCACGCTGTCGCCGCGCTCCACCAGGCGGTCCACGAGGTGGCTGAAGGTGGTGGTGGTGGTGGTGGTGGCGGCG
GAGGATGAGGCGTCGG