Detailed information on CNT30574676


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555624Oryza barthiiOryza glaberrima22.6121.9689.08229forward
CNT30106312Oryza barthiiOryza longistaminata67.8222.2386.75687forward
CNT30104254Oryza barthiiOryza rufipogon17.5748.2497.19178forward
CNT30604665Oryza barthiiOryza punctata34.4530.5385.67349forward

Expression of CNT30574676

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSMSDKRIFLRIFISINAINHISCSIKHFLYSKFHKIXPLNPGIXIIQPIGPACQ*

>peptide 2 (65 aa)
SPFPVRRGVHVDTTSAANPTRPSQPLPSQPPPSLSPLVGLAHRPAPPRPPIETKEVHLYTLRQTQ*

>peptide 3 (52 aa)
MLPRLQGRSVGIPNLLHLILPLLIAISCFLVTTWSRLGIRALGASIDGRRQT*

>peptide 4 (89 aa)
PPPSLSDVASTWTPPQPLTPPDQVNPCPVSHPLLSPRSWAWPIDQLPLVRPLKQRKSIYTPSAKHNDQKSIYAPSQFTSLSPYVGPTCQ*

Sequence

>CNT30574676
CCTCCCCCTTCCCTGTCCGACGTGGCGTCCACGTGGACACCACCTCAGCCGCTAACCCCACCAGACCAAGTCAACCCCTGCCCAGTCAGCCACCCCCTTC
TCTCTCCCCGCTCGTGGGCCTGGCCCATCGACCAGCTCCCCCTCGTCCGCCCATTGAAACAAAGGAAGTCCATCTATACACCCTCCGCCAAACACAATGA
CCAAAAGTCTATATATGCTCCCTCCCAATTCACATCTCTCTCACCATATGTTGGCCCCACATGTCAATGAGTGATAAAAGGATATTCTTGAGAATATTCA
TTTCCATAAATGCAATAAATCATATCTCCTGCTCCATAAAACATTTCCTATATTCCAAATTCCATAAAATCNTTCCTCTTAATCCGGGGATTNCAATAAT
TCAACCCATTGGTCCCGCATGTCAGTGATTGTCAATAATACTCTTGAGAATATTATTTCTATAAATTCTATAAGCCATTTCTCGTACTCCAAAAAAATCC
GATAGATCATTTCCTTGTCCAGAAATCCAATTAAGCTTCCAAAATCCACATCTCCTCAACCGCTCGACCGATTGACTCCGTTCTACTTCCAGTAGTTCCG
TAAAATTGAGATCTATTTAATGGCACTATTAATTAGTCTAAATAGGATCTTTCTTTCGGTCTTTTGGTTAGGTTTTTGATTGTTTGCGTATAGTTGCGGT
TACCAGATTTTCGTCAAGCGGATTTCTTGAAGATTCGTGAAGATCAAGACCCTGAGCAAGGCAAGCCACCTTTGAACATATTGAGCCTATATTTGAACTT
AATTATATTGCTTGCAAAATATTATGCATTGATAGGATTGCACTTAATATGTTACCCCGTTTGCAAGGCAGATCGGTGGGCATACCTAACTTGTTGCATT
TGATCCTTCCATTGTTAATTGCTATATCATGTTTCCTTGTAACCACCTGGTCGCGCCTCGGTATTCGTGCACTCGGTGCGAGTATCGACGGTCGCCGTCA
AACTTAAAATATG